BAC Information

Click to search

BAC

Clone NameMSMg01-457F03
Chromosome14 (Build37)
Map Location 51,998,066 - 51,998,518
singlet/doubletsinglet
Overlap geneEG638695, Vmn2r-ps110
Upstream geneOlfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238
Downstream geneLOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F03.T7 (MSMg01no457_f03.b1)MSMg01-457F03.TJ (MSMg01no457_f03.g1)
ACCAG543415AG543416
length743765
length of high quality
(start - end)		477 (50 - 526)453 (82 - 534)
definitionCHROMAT_FILE: MSMg01no457_f03.b1 PHD_FILE: MSMg01no457_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:29 2005CHROMAT_FILE: MSMg01no457_f03.g1 PHD_FILE: MSMg01no457_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTGTGCATGACTGCTTTTCAACTGGCCTTGATGTGTATAG
TTACTTATTATATCTGAATTTCCTATTTCTTTCTTCTTCTCTGGTTTAGT
CTGTGAACCTCAATGTTGCTTGATGTAATGATTATTAAACTATGAAAAAT
TGAGATATAAGGACTCAGTAGAGCACACTTCAAAATGTCCCAGGTGTATG
CTGTGTGTTGTCATTTTGAGAACAATGTAATAACTGTGTAGTGGTAGTTC
CAGATTAATGCATAACTTTCAAAGAAAGTTTGAAGAAATTATTAGAAAAT
GAAATACACACAACATTAGTACCCGAGAAATGTAAAAGTTATTGATGTTC
TAAAATTAGTTTCACACAACATTTGAGAGTAGTCCTAAATAGTAAAGTAT
AGAATATGTCATACTGTATGCCAGTCAAACTAAGTCAAAACACTGGGACT
CTTACAAGGGCTATTGTGTGCAATGTACAGAATCAGAAAGCTAGCAGAAG
TACTGAGTTAAAGGTTAAGCACCTCTGACCCATTCAGTGCTTTGGTAAGA
GGCTTTTCCATCAAAGCCCTACCCTGGAAAGCAAGGGTTTGGATCTTCCG
TAAACCCCACCTACTCAAATGGATACCATGTTTTCCTTTGTAAAAAAAAG
GAAAAACCCTTTTCGCCCCCTTTTTTGTAAATTTCTTTTTTTT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAAAACTTCCATAAAAT
ATTTTGATTACATTAATTGCTTATGTGTGGATGGTGAGAAAAACATGTAC
AAGTACACATATGACCAAATAATACCCGTATAGTTACATTTACATGCACT
TTTGAGACATTTGATATAGGTGCTGGGATATGAACTTGGGCTCTCTGGTA
GAACAAAATATTCTACTTATATCTAACCCAACTTCTTAGGCTTTTATGCA
AGTTATCAAACAATAGCTCTCCACAAATGCATTGTTGTAGCTAAGAATTC
TGAATACCAAAAAATAACATCAACGTCCTCTGAAAACATAAAAATTAAGT
GCAATTACGATTGCAGTTCATATTGTAGACATGATGGGAATTACAATTTA
GGAATGGGGTATGATTGGTTAAGAAAAGCCGTCTGGTTTATCATTCTTCT
TCTTTTATTTTTAAATTATTCTCTTTATTTACATTTTCAATGTTATCCCC
TTTCCTAGTTTCCTCTCTGAAAACCCCCTATCTCCTCCCCCAACCCACCT
ATTCTCATTTCTTGGTTCTGGGAATCCCCCTATATGGGGTATAAAAAACT
TTTCATGAATGCAGGCCCTCTCCCCCCCTTTGTTTACCGAAAGGTTCTCC
CCTTTTTTTATTACTATATTATAATCCTCACTTCCTCCCTTGGTGTTTTC
TTTTTTTGTGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f03.g1 MSMg01no457_f03.g1 CHROMAT_FILE:
MSMg01no457_f03.g1 PHD_FILE: MSMg01no457_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:29 2005
         (453 letters)



>mm_chr14_51997866_51998718
          Length = 853

 Score =  876 bits (453), Expect = 0.0
 Identities = 453/453 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaaacttccataaaatattttgattacattaattgcttatgtgtggatggtgagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaaaacttccataaaatattttgattacattaattgcttatgtgtggatggtgagaaa 260

                                                                       
Query: 61  aacatgtacaagtacacatatgaccaaataatacccgtatagttacatttacatgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatgtacaagtacacatatgaccaaataatacccgtatagttacatttacatgcactt 320

                                                                       
Query: 121 ttgagacatttgatataggtgctgggatatgaacttgggctctctggtagaacaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagacatttgatataggtgctgggatatgaacttgggctctctggtagaacaaaatat 380

                                                                       
Query: 181 tctacttatatctaacccaacttcttaggcttttatgcaagttatcaaacaatagctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctacttatatctaacccaacttcttaggcttttatgcaagttatcaaacaatagctctc 440

                                                                       
Query: 241 cacaaatgcattgttgtagctaagaattctgaataccaaaaaataacatcaacgtcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaatgcattgttgtagctaagaattctgaataccaaaaaataacatcaacgtcctct 500

                                                                       
Query: 301 gaaaacataaaaattaagtgcaattacgattgcagttcatattgtagacatgatgggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaacataaaaattaagtgcaattacgattgcagttcatattgtagacatgatgggaat 560

                                                                       
Query: 361 tacaatttaggaatggggtatgattggttaagaaaagccgtctggtttatcattcttctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaatttaggaatggggtatgattggttaagaaaagccgtctggtttatcattcttctt 620

                                            
Query: 421 cttttatttttaaattattctctttatttacat 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 cttttatttttaaattattctctttatttacat 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |