BAC Information

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BAC

Clone NameMSMg01-457F09
Chromosome14 (Build37)
Map Location 68,781,257 - 68,937,227
singlet/doubletdoublet
Overlap genenone
Upstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F09.T7 (MSMg01no457_f09.b1)MSMg01-457F09.TJ (MSMg01no457_f09.g1)
ACCAG543427AG543428
length773770
length of high quality
(start - end)
437 (51 - 487)246 (84 - 329)
definitionCHROMAT_FILE: MSMg01no457_f09.b1 PHD_FILE: MSMg01no457_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:30 2005CHROMAT_FILE: MSMg01no457_f09.g1 PHD_FILE: MSMg01no457_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,936,794 - 68,937,227)(68,781,257 - 68,781,502)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTGAGTTCCTTATGATCTGCTGTAGTAATAATCCAACA
ATCTAACCTCAAACTGACAAAGCAAGAGAGTTGGAAAAGATGCTTTAAGG
TCAGGTCTGAACAGTTGGAAAAGTAATGCTAACAGCAGCCCAGGGTGCTA
GAGACCTCCAACCACTGCTGAGGGTCCAGAACAAACCAAGTGCCATAGTT
CTACCTAGAAGGCATAGGTTCATGGCTCAAATTAGCAGTAAGAGTCATAT
ATGGACATTTTTCACATTAGTCATATTAACTTTCTTTAGCCTCCAAATAA
AAAAACTGACATTTTATTTCACCCAAACATTTGATGTCTCTGTTTGAAGA
ACTGTTATTAACATTCTTGTTTTTATTGCTTGAGAACTTCAGATCCCCCC
TGCCCCATGGTAAAGGTAGACAGCAGTTTTCTGAATTCTGTTCTTCTCTT
AAGCCCTTCTCTTTTGCTTTACCAGAAATAGGAGGTCTGTTTTCGGTACA
AATGCACGGGTGCAAAGAGATCCTAGTTCTATTTACACCTTATCAATTTC
TTAATTTTGGGGGTTGAAAGGAACTCTTTTATCTGACCTCCCCATTTTTT
TATACTATTTACATTTTTTTTTTACAAAAAAAAAATATATTTTTTGTTTT
TCCCCCTACAATTCTTTTTCTTTCTTTTTGTTCGCGGGTGAATAAATTTG
GTATTCCCCTTCTCTACAATCTN
NNNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATTATTTACTTAA
TATTCACAAGGATGCTAAGTCACACACAGATGAGGAATAAATCCGACAAA
GCATGACAACCTACTTATCTGCAAGTAGTAGATCCTCTGTGTCACTGTGA
CATGTTGTACTTTTCTATACCGCACATCCCTCCTTTTGCATCTGCTCCAT
TGCATGCAGAATGTCAGATGGATGCAATGAGTCACTTTGACATTTCTCCA
GTGGCCTTTTTGGGAACAGTTCCCTCTCTCTTTTGTGCTGACTCCCTGTA
CAGAGGGAACCTCACTGTCCCCCAGAGTGTCCTTCATCCATTATACAAAT
CCCATGGTAATGACATATGACACTTCTGAAACAGGAAGCAAGGACTCACA
GTTACAGGCCCGTCATTTCCTCTTGGACACTTGATAGGATGCTAATGGAT
TGCTTCTTTGTTCAAACTATGGTGAGCTTCACTTTGTGTTTCTTGAGGTC
ATTGGAATACGGGGGGTTGTACCGGGAGAGGGTCCTTTTTTTTTTTATAT
CTCTTCTTTTTTTTCCTCCCCGCCTTATTATCTTTATTTTTTTTCTTTTA
CTCTTTATTCTTCCCTCTTCACCACTTTTTTTTTTTTTTATCTCTTTCCC
TCCTGTTAATTTCCCTCTTCTCTAATCTATCCATTTTTTTACTCTACCGT
ATAAATTCTTATTTACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f09.b1 MSMg01no457_f09.b1 CHROMAT_FILE:
MSMg01no457_f09.b1 PHD_FILE: MSMg01no457_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:30 2005
         (437 letters)



>mm_chr14_68936591_68937427
          Length = 837

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacttgagttccttatgatctgctgtagtaataatccaacaatctaacctcaaa 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaattcacttgagcaccttatgatctgctgtagtaataatccaacaatctaacctcaaa 578

                                                                       
Query: 64  ctgacaaagcaagagagttggaaaagatgctttaaggtcaggtctgaacagttggaaaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctgacaaagcaagagagttggaaaagatgctttaaggtcaggtctgaacagttggaaaag 518

                                                                       
Query: 124 taatgctaacagcagcccagggtgctagagacctccaaccactgctgagggtccagaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taatgctaacagcagcccagggtgctagagacctccaaccactgctgagggtccagaaca 458

                                                                       
Query: 184 aaccaagtgccatagttctacctagaaggcataggttcatggctcaaattagcagtaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaccaagtgccatagttctacctagaaggcataggttcatggctcaaattagcagtaaga 398

                                                                       
Query: 244 gtcatatatggacatttttcacattagtcatattaactttctttagcctccaaataaaaa 303
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 397 gtcatatatggacatttttcacattagtcataaaaactttctttagcctccaaataaaaa 338

                                                                       
Query: 304 aactgacattttatttcacccaaacatttgatgtctctgtttgaagaactgttattaaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aactgacattttatttcacccaaacatttgatgtctctgtttgaagaactgttattaaca 278

                                                                       
Query: 364 ttcttgtttttattgcttgagaacttcagatcccccctgccccatggtaaaggtagacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttcttgtttttattgcttgagaacttcagatcccccctgccccatggtaaaggtagacag 218

                         
Query: 424 cagttttctgaatt 437
           ||||||||||||||
Sbjct: 217 cagttttctgaatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no457_f09.g1 MSMg01no457_f09.g1 CHROMAT_FILE:
MSMg01no457_f09.g1 PHD_FILE: MSMg01no457_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:30 2005
         (246 letters)



>mm_chr14_68781057_68781702
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaattatttacttaatattcacaaggatgctaagtcacacacagatgaggaataaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaattatttacttaatattcacaaggatgctaagtcacacacagatgaggaataaatc 260

                                                                       
Query: 61  cgacaaagcatgacaacctacttatctgcaagtagtagatcctctgtgtcactgtgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgacaaagcatgacaacctacttatctgcaagtagtagatcctctgtgtcactgtgacat 320

                                                                       
Query: 121 gttgtacttttctataccgcacatccctccttttgcatctgctccattgcatgcagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtacttttctataccgcacatccctccttttgcatctgctccattgcatgcagaatg 380

                                                                       
Query: 181 tcagatggatgcaatgagtcactttgacatttctccagtggcctttttgggaacagttcc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagatggatgcaatgagtcactttgacatttctccagtggcctttttgggaacagttcc 440

                 
Query: 241 ctctct 246
           ||||||
Sbjct: 441 ctctct 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)