BAC Information

Click to search

BAC

Clone NameMSMg01-457O07
Chromosome14 (Build37)
Map Location 73,279,620 - 73,279,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457O07.T7 (MSMg01no457_o07.b1)MSMg01-457O07.TJ (MSMg01no457_o07.g1)
ACCAG543852AG543853
length739744
length of high quality
(start - end)
242 (81 - 322)247 (333 - 579)
definitionCHROMAT_FILE: MSMg01no457_o07.b1 PHD_FILE: MSMg01no457_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:17 2005CHROMAT_FILE: MSMg01no457_o07.g1 PHD_FILE: MSMg01no457_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCACATCAGTATGCCATTTTTAATAGGGTTAT
TTGGTTCTCTGCAGTCTGACTTCTTGAGTTCTTTGTATAAATTGGAAGTT
AGCCCTCTATCAGATACTGTGTAGGTAAATATCTTTTCCCAATCTCTGGA
AATCAGTTTGGTGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGAC
ACAGTTATACCACTTCTGAGCATATACCCAGAAGATGCTCCAACATGTAA
TAAGGACATATGCTCCATTATTTTCTTATCAGCCTTATTTATAATAGCTA
GACACTGGAATGAACCCAGATGCCCCTCAACAGAGGAATGTATATAGAAA
ATGTGGTGCATTTACACAATGGAGTAGTATACAGCTATTAATAATAATAA
ATTTATAAAATTCTTAGGCATATGGATGGATCTAGAAAATATCATCCTGA
GTGAGGTAACCTAATCTCTAAAGAACTCACTTGTCATATATTCTCTGATA
AGTGGATATTATTCCTTTAATTTTGTATTATCCAACATTACAATAAATGA
CCATACTGAAGCTTCATAACCAATGCTTGACTCCAATATGTGATTCTTGT
TTATCTTATTATCTCATGTTCAATATTTTCTGAAGTCATTATTTTCGTTC
TAAATACTTTAATTTTATCTATTTTCCTTTTATTTACGT
NGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCAGAGAAATTCCATCCAAACTCCTAGAAATGG
CGGGATCTACCTAATGCAAACAATAAGAAACAAGTCTAAAATCCAAACAG
ATAATAAAATAGATTTTCAAAAAATTAGTTTAGCTTGGACAATAAATAGG
TCAAAAATTTCAGGTGGTCAGATGAAAGAATTCTGTATAACAGTAAATCT
GGAACACCCATCTGACGGGCGTGGGCTTTGGCTTCTTCACTGTCATAGCT
GCTATCAGGAAAAGCTTCCATGTGTTTCTTCTTGATACAGAAAGAATTCC
TTTGGGAATGACACATCCCCCAGACCTGCATCCTGGCTCAAGCTCTCTAA
ATAATAAGCAGTCCCAAGCTTCCTGGGATAATGATCCTGTTGTGGCCATT
AGGAATTCAGAAATCTCAACCTGCCTAAAATATGAAATAGTTAAAAACTT
GAATATAGAGATTACAAAGTCCTTAGAGCCTAATATTACAATTTGTGTTA
AATGCAAGAACTTGTAATAGACACGTAAGAGTANAAGTACTTATGTCAAA
AGGAATTTCTTACATGAGAAGTTCAAAAGTTAGTCTTATGCATTTTATTT
AAGAAACATGTTTTGTTTTTGGCCTCACTTAACATGGAGACGAGGAAAAT
GTACTTAGATTAATATCAGTGGGGATCCCTTTTCCAAAATACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_o07.g1 MSMg01no457_o07.g1 CHROMAT_FILE:
MSMg01no457_o07.g1 PHD_FILE: MSMg01no457_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:17 2005
         (247 letters)



>mm_chr14_73279420_73280066
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatacagaaagaattcctttgggaatgacacatcccccagacctgcatcctggctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatacagaaagaattcctttgggaatgacacatcccccagacctgcatcctggctcaag 260

                                                                       
Query: 61  ctctctaaataataagcagtcccaagcttcctgggataatgatcctgttgtggccattag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ctctctaaataataagcagtcccaagcttcctgggacaatgatcctgttgtggccattag 320

                                                                       
Query: 121 gaattcagaaatctcaacctgcctaaaatatgaaatagttaaaaacttgaatatagagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcagaaatctcaacctgcctaaaatatgaaatagttaaaaacttgaatatagagat 380

                                                                       
Query: 181 tacaaagtccttagagcctaatattacaatttgtgttaaatgcaagaacttgtaatagac 240
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tacaaagtccttaaagcctaatattacaatttgtgttaaatgcacgaacttgtaatagac 440

                  
Query: 241 acgtaag 247
           |||||||
Sbjct: 441 acgtaag 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)