BAC Information

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BAC

Clone NameMSMg01-457P16
Chromosome14 (Build37)
Map Location 111,103,201 - 111,127,293
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P16.T7 (MSMg01no457_p16.b1)MSMg01-457P16.TJ (MSMg01no457_p16.g1)
ACCAG543916AG543917
length755730
length of high quality
(start - end)
548 (48 - 595)302 (335 - 636)
definitionCHROMAT_FILE: MSMg01no457_p16.b1 PHD_FILE: MSMg01no457_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:25 2005CHROMAT_FILE: MSMg01no457_p16.g1 PHD_FILE: MSMg01no457_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,126,751 - 111,127,293)(111,103,201 - 111,103,505)
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTCTTGTCAGGAGGTTCAGAGATTTTCAAATATAAATTTAA
AAACTATGATTGAAAGTGAAAATATAATTTCACTTTAAGTATTATCACAA
AAATTTTAAGTCATCTGTTTTGCTAAAAGCCATCTATCTTTCATTATTTT
CACAATAGCATCATTATATTAAGTCAATCCATTTTCTCAGTTTTAATTTC
GGTTCATCTTATCATATTAAAAACAAACACAAAAGTCTTAACTGGTTATA
ACATGCCCATTCACTTTTGTATGACGTCCTCTTAATGTTTTAGCTAGAAT
GATGCTTAAAAATAACAGACATGGAATGAAAATAATATTAAACTTGTTGT
GTATTATTTTACAAACATTTACAAACTAATTGTTATTTAATATCTATGTG
ACTATGTGCTTCTGCTATGTATGATATGGGAGACTGCATACATGTGTCTT
AATACACATGTGGACATTAAAACACAATTCCAGTAGATCATCGCTTTCCA
TTTTATTTGTACAGNTTCTTGTTCTTGTGACTCTGAATGAAGGCTATCCA
GTCCTACTTTTTTGAGGATTCTCTTATAACTATCTCCCATCTAACTCTAT
ACACCCATTTTTCAGGGAACCCTGGTTTGCATGGTAAGGTGGCTACACCT
TATATTTAACCCATACCGGAATTATTCTCCCAATAAAAATGGTTGGGAAA
AATCG
TATTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTAGGATATCCTTG
TTGATGTAAAGGTTCTGGATTCTATTCCTTATTAAACCCAATGGATGCTC
TTCATGAACTGTATTGTGCTTATCTCTTTTGAGCAAAGTTATTTGTATAC
TGATATCTGAGCAATGATGGTTTATCCAAATTCTACTCTGATTTATTTTT
TAATATACAGTGTACACTTCTTGATTCCTCAACTCAATAGGATTAAATAA
ACTTTAGGACGGAATGTGTCCCTTTATTTTGTTTATAAAATATCTCAAAA
GTAAAAAAAAAAATTACATATAGAACAGAAGCCAACATTAAATAAGCTCA
TCTGCTTTATTCACTCATCTGTTCACTCTGAGTGAGGTGGTGACACATCA
CAAAACTATGGCAATAAGGCAGGAGAAGCAAGTACTAACAATTATCCTGG
AGAATGTGTTGAGATTGTAGCCAATATGAAACAAATACCTAGACTTTGTC
TTAAAAGAATACTCAAAATACAGAAATATTTTTAAAAAACTCCTAGGAAC
ACATACTGGAATGACATATTCTATGAAAATCTTTTCTTGTCAAAATATTT
TGAAATAGACTTTTTTTCTTTTTTTGGAACTTGACTCATTGAAGTACAAA
GGATTATAATATTTTTATTACAATTTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p16.b1 MSMg01no457_p16.b1 CHROMAT_FILE:
MSMg01no457_p16.b1 PHD_FILE: MSMg01no457_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:25 2005
         (548 letters)



>mm_chr14_111126547_111127493
          Length = 947

 Score =  969 bits (501), Expect = 0.0
 Identities = 534/546 (97%), Gaps = 5/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctcttgt-c-aggaggttcagagattttcaaatataaatttaaaaactatga 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattcttctcttgtactaggaggttcagagattttcaaatataaatttaaaaactatga 688

                                                                       
Query: 63  ttgaaagtgaaaatataatttcactttaagtattatcacaaaaattttaagtcatctgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttgaaagtgaaaatataatttcactttaagtattatcacaaaaattttaagtcatctgtt 628

                                                                       
Query: 123 ttgctaaaagccatctatctttcattattttcacaatagcatcattatattaagtcaatc 182
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcgctaaaagccatctatctttcattattttcacaatagcatcattatattaagtcaatc 568

                                                                       
Query: 183 cattttctcagttttaatttcggttcatcttatcatattaaaaacaaacacaaaagtctt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cattttctcagttttaatttcggttcatcttatcatattaaaaacaaacacaaaagtctt 508

                                                                       
Query: 243 aactggttataacatgcccattcacttttgtatgacgtcctcttaatgttttagctagaa 302
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507 aactggttataacatgcccattcacttttgtatgacgtcctctcaatgttttagctagaa 448

                                                                       
Query: 303 tgatgcttaaaaataacagacatggaatgaaaataatattaaacttgttgtgtattattt 362
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||  |||| |
Sbjct: 447 tgatgcttaaaaataaaagacatggaatgaaaataatattaaacttg-tgtg--ttatct 391

                                                                       
Query: 363 tacaaacatttacaaactaattgttatttaatatctatgtgactatgtgcttctgctatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tacaaacatttacaaactaattgttatttaatatctatgtgactatgtgcttctgctatg 331

                                                                       
Query: 423 tatgatatgggagactgcatacatgtgtcttaatacacatgtggacattaaaacacaatt 482
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatgatataggagactgcatacatgtgtcttaatacacatgtggacattaaaacacaatt 271

                                                                       
Query: 483 ccagtagatcatcgctttccattttatttgtacagnttcttgttcttgtgactctgaatg 542
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 270 ccagtagatcatcgctttccattttatttgtacagtttcttgtttttgtgactctgaatg 211

                 
Query: 543 aaggct 548
           ||||||
Sbjct: 210 aaggct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space:   504106
Effective search space used:   504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no457_p16.g1 MSMg01no457_p16.g1 CHROMAT_FILE:
MSMg01no457_p16.g1 PHD_FILE: MSMg01no457_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:25 2005
         (302 letters)



>mm_chr14_111103001_111103705
          Length = 705

 Score =  559 bits (289), Expect = e-164
 Identities = 300/305 (98%), Gaps = 3/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaatatctcaaaagt---aaaaaaaaaaattacatatagaacagaagccaacattaa 57
           |||||||||||| |||||   |||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ataaaatatctccaaagtaaaaaaaaaaaaaattacataaagaacagaagccaacattaa 260

                                                                       
Query: 58  ataagctcatctgctttattcactcatctgttcactctgagtgaggtggtgacacatcac 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagctcatctgctttattcactcatctgttcactctgagtgaggtggtgacacatcac 320

                                                                       
Query: 118 aaaactatggcaataaggcaggagaagcaagtactaacaattatcctggagaatgtgttg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaactatggcaataaggcaggagaagcaagtactaacaattatcctggagaatgtgttg 380

                                                                       
Query: 178 agattgtagccaatatgaaacaaatacctagactttgtcttaaaagaatactcaaaatac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattgtagccaatatgaaacaaatacctagactttgtcttaaaagaatactcaaaatac 440

                                                                       
Query: 238 agaaatatttttaaaaaactcctaggaacacatactggaatgacatattctatgaaaatc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatatttttaaaaaactcctaggaacacatactggaatgacatattctatgaaaatc 500

                
Query: 298 ttttc 302
           |||||
Sbjct: 501 ttttc 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 705
Length adjustment: 9
Effective length of query: 293
Effective length of database: 696
Effective search space:   203928
Effective search space used:   203928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)