BAC Information

Click to search

BAC

Clone NameMSMg01-458O06
Chromosome14 (Build37)
Map Location 98,916,177 - 98,916,432
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O06.T7 (MSMg01no458_o06.b1)MSMg01-458O06.TJ (MSMg01no458_o06.g1)
ACCAG544614AG544615
length781726
length of high quality
(start - end)
246 (73 - 318)259 (331 - 589)
definitionCHROMAT_FILE: MSMg01no458_o06.b1 PHD_FILE: MSMg01no458_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:36 2005CHROMAT_FILE: MSMg01no458_o06.g1 PHD_FILE: MSMg01no458_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAACAGCCGCGG
AATTCCTGCTATTGCAACTCTGTAGGTCTTCTTGTGATGCCCTTAACTCT
GCCGGCTTGCTCAATTCTATCCTCCACTCTTCCGCAAGACTCCTCTGGCT
CCGCCTGATGTTTGGCTGTGGGTCTCTGCATCTGCTTCCATTCATACATG
AAAGAAAAAAGTCTTTCAGGAGCCAGTTATGCTAGGTTCCTGTCTGCAAG
CATAGCCTGGTTGGACTTCAGTGGGATAGGATGTGCCTAGTCCACTTGAG
ACTAGGTGTTCCAGGGTGTTGTTGGTACCCAAGGGAGAGGCTCTCCCTTC
TCCATGGAGTGGGTAATGGGGGAGGTATTTGTATGGCCGCCCCCCCCTTT
TCCCCCTCTCNCCCCCCCCCTTTTTTTTTTTTCTTTTCTCCTCTCCTTTT
TCCTCCTCTCCTTCCCCTCTCTTCCCTCCTTTTTTTTCCGTCTTTTTTTT
TCCTCTCCTCCTTTCTTTCNTCTCTCTCTTCCTTCTNTTTTTCCCCTTCT
CTCCTCTCCCTCTTCTTTCTTTTTTCTCTCTCTCCTGCTTTTCTTTCTCT
CCCCCTCTCTTTTCCTGTGTTTTTCTTGCTTCTCTTTTTCCCTTTTTGTT
TTTTTTTTTTCGCCCTTTGCCCGGCTTTTTTTTTTTTCTTTCTCTTTTTC
CCGCNGTTTTGCCTCCTTTCGCCATCCCCTCTTTCTTCTCCTTTTTTCTC
TCTCTTCTCCCTTCCTCTTCCTTTCTTCTTG
NTGGTCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGCACTAAGCCATAGGA
AAAAAAAACATAAAAATATTTATATCTCATTTGCTCTTGAATAAGCTTCA
TTCTTTCCTGGGGTGCTTGTCTATTCCACACCCATTGCCTATTACCAGTC
ACAAAGAATTGGCACTGAGCTATTCTGTCAAGTGTGAGTCTGGGAACTTT
ACACCTGCCAGTTCAGACTGATTTTCAATATTGTGTGAAAATGCCAAGGA
ATGACCTGCCACTCCATGTCTGTTATTTTAGTCCTGTTCATGTTGCTCAA
TGGTTTGTGGCGTCTATCTTGGAGAGATTATTTTTCTATGGTTCAGTACC
TCTCACCATCCCAGGCAGTAATTACCTTGTATGCCAGGCACCGGATAATA
ATAGAGGAACTAAGCAGAAAGCGTGTCTTCAGTTAGTAATTATTTGTGAA
TATGTGAACACAAATAATTACTTACCATTTTTTGTGTGTTTGTGTGCGTG
TGTGTGTATTTTTGTATGTGTGTTTGTGTATGTGTGCGTCTTTTTCCCCT
CCTCTCTTACTTAATTTCTTCTTTCTTCTCCCTTCTTTCTTTTTCCTCTT
CTACTATTTTTTTTTTTTTTCTTTTATCCTCTACCTCTTATCTTTTCTAT
CACCCACCCCTTCCTCACTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o06.g1 MSMg01no458_o06.g1 CHROMAT_FILE:
MSMg01no458_o06.g1 PHD_FILE: MSMg01no458_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:36 2005
         (259 letters)



>mm_chr14_98915977_98916635
          Length = 659

 Score =  495 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcctgttcatgttgctcaatggtttgtggcgtctatcttggagagattatttttctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcctgttcatgttgctcaatggtttgtggcgtctatcttggagagattatttttctatg 260

                                                                       
Query: 61  gttcagtacctctcaccatcccaggcagtaattaccttgtatgccaggcaccggataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagtacctctcaccatcccaggcagtaattaccttgtatgccaggcaccggataata 320

                                                                       
Query: 121 atagaggaactaagcagaaagcgtgtcttcagttagtaattatttgtgaatatgtgaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaggaactaagcagaaagcgtgtcttcagttagtaattatttgtgaatatgtgaaca 380

                                                                       
Query: 181 caaataattacttaccattttttgtgtgtttgtgtgcgtgtgtgtgtatttttgtatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaataattacttaccattttttgtgtgtttgtgtgcgtgtgtgtgtatttttgtatgtg 440

                           
Query: 241 tgtttgtgtatgtgtg 256
           ||||||||||||||||
Sbjct: 441 tgtttgtgtatgtgtg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)