BAC Information

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BAC

Clone NameMSMg01-458O15
Chromosome14 (Build37)
Map Location 32,669,951 - 32,670,241
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O15.T7 (MSMg01no458_o15.b1)MSMg01-458O15.TJ (MSMg01no458_o15.g1)
ACCAG544632AG544633
length729768
length of high quality
(start - end)
291 (378 - 668)127 (123 - 249)
definitionCHROMAT_FILE: MSMg01no458_o15.b1 PHD_FILE: MSMg01no458_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:38 2005CHROMAT_FILE: MSMg01no458_o15.g1 PHD_FILE: MSMg01no458_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTTTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAACAG
GGGNGGAANNCNTTCTCATTACAAAACACTTGGAACCTTAGNGATGGCAG
CCTTGGCACTGGTTTGTGCAGAATGATTCCTTCTTGGCCTTCCATCTGCC
CCAGGCTGTTTCCATGCTCACTTAGAGTAATGGATCACAACCACGGCATT
CCGATGCCCGGGCTTTTGCTTCTGGTTTTAACTAGTTTGAGGCAGCAAAG
CCTGAGCCTTGTTATTTTTCCACCATCCCCTTATGTGACTCTTTTGTGCA
GCCCCAGTTGAGAAGCACTGACTTGTGGCTTCTTAGGCTAAAGTGATTTC
ACGTGGGGCTCTTCTAGTGTGTACTGAGGCACCACTGATGTAGGATAACG
TTTAGGAAGGCAGGGGAAAGATGCACACACATAAAGGCCAATTCAAGTGC
TATTGTGTATTGCCAAGATCAATATTTCATTTACTCCTTGACTCTAACAT
TTATTGAGGGCAGCTACTAGGATGGGCATAAACAAAAATGCACAATGGAA
ATCCTGCTTTTTGACCTAACACCCCCTAGAAGAATCCCACAAGCCTCACC
GTAACACTTCCTCCATATCCCCAACTCCCCTTTGTGCACAGACAATGCTA
GCCTCACTTCTCCGTTGACTGTCCCTAAATAGGGTTTTGTCTCCCCTCCA
TTCCCATATGATTATGTGAGTTTGTGTGT
NCCGATGCAGTGTTAGGCCTGGNGGNCGCCTGTTTTCAAACTGAGGNGAA
CTATAGAAGTTCCGCAAAAATTCGGTGCTAGCTAAAGAACTGGCTAATGT
CCCACGAGGCACAGATGTAGTCTCTAGTGTGAAGACCTTTGTTTTTAACT
TGGTTTTGAAACAGGGTCTCATCTGTTAGCTAGTGTGGCTTCGAGCTCAG
GATCCTTCTGTCTCTACCTCCCAGGCTAATCTGCTGAGTAACAGTCCAAT
TTATGTCCGTTATGTACACAGTCAAACTGCCCAACTGAAGCAGCCCGCTA
ATCTGGAACCGCTATTCTTCGTTTCTTCTCATTGCAGAGGTTGGACTCAG
ATATTCTGTGTATAAGACACAGTAGCGTCTCACATAGTGCGTGTCCATTA
CAGACGGTATGTCTGTATGCTCTCTATGATAAAGACGCGTGCTACCCAGC
TTATCATCTCGCGCATACCCAGCTGCTCCGAGAGAATAGGATGAGGAGAT
TATTAACAAGAGCACCTTTGTGCTATAGGACGTCAGAGAGCGCGTGCCCC
CTCTCTCTTATATTACCATATCCCTCTTCCTTTCCTTTCCCACCCCTGTT
TCGAATTTCGCACCTTCTTCCATTTCTTCTTGCCTATCCCAATCTTCTCA
CCCTTTTCTTTCTTTTTTTCTCATTTATCCACCTTTCTCCTCCATATTTG
TTACTCCTTTTTCTCCCTTTTGTTTGCCCCCCTCCCCTTCCCGTTCTTTT
TTTCCTTCCTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o15.b1 MSMg01no458_o15.b1 CHROMAT_FILE:
MSMg01no458_o15.b1 PHD_FILE: MSMg01no458_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:38 2005
         (291 letters)



>mm_chr14_32669751_32670441
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaccactgatgtaggataacgtttaggaaggcaggggaaagatgcacacacataaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggcaccactgatgtaggataacgtttaggaaggcaggggaaagatgcacacacataaagg 432

                                                                       
Query: 61  ccaattcaagtgctattgtgtattgccaagatcaatatttcatttactccttgactctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccaattcaagtgctattgtgtattgccaagatcaatatttcatttactccttgactctaa 372

                                                                       
Query: 121 catttattgagggcagctactaggatgggcataaacaaaaatgcacaatggaaatcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catttattgagggcagctactaggatgggcataaacaaaaatgcacaatggaaatcctgc 312

                                                                       
Query: 181 tttttgacctaacaccccctagaagaatcccacaagcctcaccgtaacacttcctccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttttgacctaacaccccctagaagaatcccacaagcctcaccgtaacacttcctccata 252

                                                              
Query: 241 tccccaactcccctttgtgcacagacaatgctagcctcacttctccgttga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tccccaactcccctttgtgcacagacaatgctagcctcacttctccgttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)