BAC Information

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BAC

Clone NameMSMg01-459B07
Chromosome14 (Build37)
Map Location 103,893,399 - 103,893,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459B07.T7 (MSMg01no459_b07.b1)MSMg01-459B07.TJ (MSMg01no459_b07.g1)
ACCAG544760AG544761
length761753
length of high quality
(start - end)
540 (45 - 584)436 (72 - 507)
definitionCHROMAT_FILE: MSMg01no459_b07.b1 PHD_FILE: MSMg01no459_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:51 2005CHROMAT_FILE: MSMg01no459_b07.g1 PHD_FILE: MSMg01no459_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCTTACTTCCAAGGAAGAGCTAAATCCAATACCCCTCAAATTAT
TCCACAAAACAGAAACAGAAAAACACTGCCAAAGTCATTTTATTAGGCCT
CAGTTACTCTGATACTCAAACCACACAAAGATTCAACAAAGAGAATTACA
AACCAATTTCCGATATGAATATAGATGCAAAGAATACTCAAACCAAATCC
AAGAATACATCAAAAAGATCATCCACCATGATCAAGTAGGTTTAATCTCA
GCGATGCAGGGATGGTTCAACATACAAAAAAACCTGTCAGTGTAATCTAC
CATATAAACAAGCTGAAAGAAAAAAAAGGCACAATCATCTCATTAGATGT
GAAAAAGCCTTTGACAAAATTCAACACCAGTTCATGATAAAAGTCTAGGA
AATATCAGGAATATATATAAGGTACATGCCTAAACAATAAAGGCAGTTTA
CAGCAAAGGCAACAGCCAACAACAAATTAAATGTAGTGAAACTCAAAGCA
ATTGCACTAAAATCAGGAACAAGACAAGGCTGCCCACTCTCTTCATATTT
CTTCAATATAGTACTGAAATTATAGCTAGAACAAATTGGAAAGGAAGAAA
TCCAAGTATCCCCTACTCCCGATGATATGATAGTATGGATAAGTGGCCCC
CAAAAGTCCACCCATGAACCGCTATACCTGAAAAATACCGGCCGTGGAGT
GGCCCCTCCAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTATGGCAATACTAAATATTTAATATT
AGATCTATTTCTGGTCTCATTTTTATCATTAAATAAGGAAATAGTTTCAT
AAATAATTTCACTGAAAACTATGAGCAAGGTCATGGGAGCAGGAAGCCAA
GAGTGTCAGAGTTCTGAATAATGTTTCCTCGTTCATGCATGCGTTAGCCT
GCAGAGCCCAACTGTCCCGTCTCAAAAGTCACTGTCTCTTTTTGCGTGAA
AACACTAACTGGAAAAGAAAATTCATGCACAGAAAGAAAACAAACAAACA
AACAAACAAACACTCTTATGGTTTCATTTTAATAATACCTCAGGCAATTT
GAAGACATCGGTGTGAAGGCATAAATCAAAGATCCCTGCGCTTCTGATAA
AGTCTTCAATCCCAGAGAATTCTCATGGAAATCTTTATAAAACCACACAT
CTGGCCACTGTATTTGGACATTAACACAGAAAAAATTCCATCTTTAAATG
TAGGTCTACAGCCGGGCAGGCGTGGCGCATGGCCTTAATCCCAGCACTCG
GGAGGGATAAGCATGTGGAATTTCTGAATTCAAGGGCATCCTGGCCCTAC
ATATCGTGTTCCCCGACTCCTCCGCGCTATTTCATGAAATCCCTGTCTTG
GAAAATCCTGACCNGCTCTTTTTCTTTCAACCTCTTACCCCTTTTTTCTT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_b07.g1 MSMg01no459_b07.g1 CHROMAT_FILE:
MSMg01no459_b07.g1 PHD_FILE: MSMg01no459_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:51 2005
         (436 letters)



>mm_chr14_103893369_103894204
          Length = 836

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttatggcaatactaaatatttaatattagatctatttctggtctcatttttatcatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 466 ttttatggcaatactaaatatttaatattagatctatttctggtctcattttcatcatta 407

                                                                       
Query: 61  aataaggaaatagtttcataaataatttcactgaaaactatgagcaaggtcatgggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aataaggaaatagtttcataaataatttcactgaaaactatgagcaaggtcatgggagca 347

                                                                       
Query: 121 ggaagccaagagtgtcagagttctgaataatgtttcctcgttcatgcatgcgttagcctg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 346 ggaagccaagagtgtcagagttctgaataacgtttcctcgttcatgcatgcgttagcctg 287

                                                                       
Query: 181 cagagcccaactgtcccgtctcaaaagtcactgtctctttttgcgtgaaaacactaactg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 286 cagagcccaactgtcccgtctcaaaagtcactgtctctttttgcctgaaaacactaactg 227

                                                                       
Query: 241 gaaaagaaaattcatgcacagaaagaaaacaaacaaacaaacaaacaaacactcttatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaaaagaaaattcatgcacagaaagaaaacaaacaaacaaacaaacaaacactcttatgg 167

                                                                       
Query: 301 tttcattttaataatacctcaggcaatttgaagacatcggtgtgaaggcataaatcaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tttcattttaataatacctcaggcaatttgaagacatcggtgtgaaggcataaatcaaag 107

                                                                       
Query: 361 atccctgcgcttctgataaagtcttcaatcccagagaattctcatggaaatctttataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atccctgcgcttctgataaagtcttcaatcccagagaattctcatggaaatctttataaa 47

                           
Query: 421 accacacatctggcca 436
           ||||||||||||||||
Sbjct: 46  accacacatctggcca 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)