BAC Information

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BAC

Clone NameMSMg01-459P12
Chromosome14 (Build37)
Map Location 67,249,183 - 67,249,405
singlet/doubletsinglet
Overlap genenone
Upstream geneGm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P12.T7 (MSMg01no459_p12.b1)MSMg01-459P12.TJ (MSMg01no459_p12.g1)
ACCAG545436AG545437
length771783
length of high quality
(start - end)
446 (69 - 514)230 (81 - 310)
definitionCHROMAT_FILE: MSMg01no459_p12.b1 PHD_FILE: MSMg01no459_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:05 2005CHROMAT_FILE: MSMg01no459_p12.g1 PHD_FILE: MSMg01no459_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATTTGCCTGTAATTCACCTCGGTAGGATAAGATCCTGGGTTTTAT
TTTCAGCTACCTGTGCTCTGCGGCTGTACCGCATACACCGGCTCTTTCAG
GGCACACAGAAGGCTGGTGCCTAAGCTGGGAATGTGAATCCCTAAATTCA
TTCTTTACAGCCATTTTGTCTAGCACCATTAAAGGCAACCAACCAGTGTC
ATTCTGTCTGTTAATTTGATTTTCAGGAGTGGCCTATGGCATCAAATACA
ACACCCAGAGCCTTGTCTCATAGAAATATTTGACTTAGGGCTCCCAGTGG
CATTTTGTGTATTTCATTACATCATTGTGGTGTAGACTACATATGTTTTC
TTTACTTACTATAAGAAGAATCATTAGTGCCCATGAACTACCTCATACTA
GAGAATCGAGTCTAGAAACTTCAGAAAATGTATCCTGAATATTTTGTTTC
TTATCCCATGAGATGGGCTATGTCTATGATCTCAGCACAGGGATAGGGAT
TCATACCCTGAGAAATCTGATCCTGAGACTATGAGGGAAATTCCTAAAGC
CAAGTTTAAAAGACCCTAAGGGAGGATTGTTTCTTCAGGGCCCAGCTGGC
CTTATTTATACACGAGCTGGCCCCCTCGTCCATCCAAAATCCACCCACCT
AACTTTTCCACGACCAATATTTCTTTTATCCCCCTCTGATCTGACCCGTC
CTCTTAAATTTACATACACAG
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCACGCACACACACACAC
ACACACACACACACACACACACACACATGCGCGCGTGCCTTGTGACTTCC
CTCTGTCCAGTTGCCTTTCCCATTTCTATCTATTAACCTGAATCTGGCTT
ATCCTGCAATCCTTCCATCAAGTGGTACCACCCACAAGCTTTACCAGACC
CTGCCATCACCTGAATTTCTTGACCCTCACCACCTGCATTTCTTGACCCC
ACCACAGCTGTTTTTTCAATACTTCAGAATGAAGCCAGAGAAACCTCTCT
TTGGGTTTCTGAGTTTTAGAGAGTCCAGCTCTGACTCTCTTTAGCCACAG
ACTTCTCCTTGATATAAAGGGTCCATGGAATTAAAGTCTCCCGCCTGATT
GGAGCCTGAACCCTGACTTTCTCCTGTCTCCACCCTCTCTGGACAGGCAT
CACAGGTTTGTACTTTGTCCTGCCAACAGGTGGCTCTCATAAGAGCCGGA
CTAAGGGGTCCAAAGCATTTGCCTGGGCCCTTGAAACTCCCGAAGAGAAA
AAAGAGGCCCAGGGTCCTTTGTCAACCTTTTGGAATAAATGGTTTCCCCA
CTATATTTTCCTTTTCCCCCCTTGCCAAATATAAGGCAATTTTCTTCCTA
GAGGGAAACCCCTAAGTGGGCGCCACAAAACCAGCCGCCTTCCCTAACTA
TTTTTTTTTTCTTCCCTCTAATGGGCCGTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p12.g1 MSMg01no459_p12.g1 CHROMAT_FILE:
MSMg01no459_p12.g1 PHD_FILE: MSMg01no459_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:05 2005
         (230 letters)



>mm_chr14_67248976_67249605
          Length = 630

 Score =  393 bits (203), Expect = e-114
 Identities = 218/223 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   cacacacacacacacacacacacacacacacacacacacatgcgcgcgtgccttgtgact 67
           |||||||||||||||||||||||| ||||||||||||| |||| | || |||||||||||
Sbjct: 208 cacacacacacacacacacacacatacacacacacacatatgctctcgcgccttgtgact 267

                                                                       
Query: 68  tccctctgtccagttgcctttcccatttctatctattaacctgaatctggcttatcctgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tccctctgtccagttgcctttcccatttctatctattaacctgaatctggcttatcctgc 327

                                                                       
Query: 128 aatccttccatcaagtggtaccacccacaagctttaccagaccctgccatcacctgaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatccttccatcaagtggtaccacccacaagctttaccagaccctgccatcacctgaatt 387

                                                      
Query: 188 tcttgaccctcaccacctgcatttcttgaccccaccacagctg 230
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcttgaccctcaccacctgcatttcttgaccccaccacagctg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)