BAC Information

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BAC

Clone NameMSMg01-460C08
Chromosome14 (Build37)
Map Location 79,108,857 - 79,109,300
singlet/doubletsinglet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C08.T7 (MSMg01no460_c08.b1)MSMg01-460C08.TJ (MSMg01no460_c08.g1)
ACCAG545572AG545573
length709707
length of high quality
(start - end)
576 (40 - 615)442 (70 - 511)
definitionCHROMAT_FILE: MSMg01no460_c08.b1 PHD_FILE: MSMg01no460_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:18 2005CHROMAT_FILE: MSMg01no460_c08.g1 PHD_FILE: MSMg01no460_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATT
CTCACTTTACCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAA
CTGGATATATTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAGA
TACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGACAAA
TGAAGACTG
TGCAGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCGCCTATGGCTGTGAGATTTCACTATGGC
CCTGCACACTTGCAACCTTCTTAAGAAAGTTGGGTGCCTTACTGGGAAAA
GAGCCATTCAGCTCAAGACTCCTAACATTTGGCTGCTGGCATCTAATGGG
TGCTGGGCACGAGCAGAGGGCTTTCTCTCGTCTACCCACAACCTCCTACT
AGGGTTTACCTGAGGAGGAACTGGGGCCCTCGGGTGCTATCCAGCTTGCC
TGATCTTAACTGGAACCAGAGCTGGGTGTGATGGTGCATGCTTATAATCC
CACCCGTTGGGAGACAAGAGGAAATGAGTTCAAGACCAGCATGGGCTGTA
CAGTGAGTTCAAGGATGGACATGGACGAACGGACACACACACACATCATT
AGAACCAGAACCCACTTTATTTCATGCACGTCAGGGGTTTGTATGTAGTT
TTTGGATTCCAAAACAGATTTATTTGTTTGTTTGAGGAAACTTTCTTATT
CGTTTTCTAAGTAAACTATTCTTTGTATTTTACAGAACAAGGTACACCAC
ACTTCATACAGATAATCTGGAAATTTTCCCCTATTATTAATGCATCTCCT
AAAAATTTGAACCTGTGTAGCTTTCCTTAATACACCCCCTTCTTTCCCCT
CCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c08.g1 MSMg01no460_c08.g1 CHROMAT_FILE:
MSMg01no460_c08.g1 PHD_FILE: MSMg01no460_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
         (442 letters)



>mm_chr14_79108657_79109498
          Length = 842

 Score =  785 bits (406), Expect = 0.0
 Identities = 434/444 (97%), Gaps = 2/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgcctatggctgtgagatttcactatggccctgcacacttgcaaccttcttaagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgcctatggctgtgagatttcactatggccctgcacacttgcaaccttcttaagaaag 260

                                                                       
Query: 61  ttgggtgccttactgggaaaagagccattcagctcaagactcctaacatttggctgctgg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggtgccctactgggaaaagagccattcagctcaagactcctaacatttggctgctgg 320

                                                                       
Query: 121 catctaatgggtgctgggcacgagcagagggctttctctcgtctacccacaacctcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctaatgggtgctgggcacgagcagagggctttctctcgtctacccacaacctcctac 380

                                                                       
Query: 181 tagggtttacctgaggaggaactggggccctcgggtgctatccagcttgcctgatcttaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||
Sbjct: 381 tagggtttacctgaggaggaactggggccctcgggcgctatccagcttgcctgatcagaa 440

                                                                       
Query: 241 ctggaaccagagctgggtgtgatggtgcatgcttataatcccacccgttgggagacaaga 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaaccagagctgggtgtgatggtgaatgcttataatcccacccgttgggagacaaga 500

                                                                       
Query: 301 ggaaatgagttcaagaccagcatgggctgtacagtgagttcaaggatggacatggacgaa 360
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ggaaatgagttcaggaccagcatgggctgtacagtgagttcaaggatggacatggacgga 560

                                                                       
Query: 361 cggacacacacacaca--tcattagaaccagaacccactttatttcatgcacgtcagggg 418
           ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 cggacacacacacacacatcattagaaccagaacccactttatttcatgcatgtcagggg 620

                                   
Query: 419 tttgtatgtagtttttggattcca 442
           ||||||||||||||||||||||||
Sbjct: 621 tttgtatgtagtttttggattcca 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)