BAC Information

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BAC

Clone NameMSMg01-461D21
Chromosome14 (Build37)
Map Location 36,752,492 - 36,752,973
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneLOC665933, 4930474N05Rik, Gcap14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D21.T7 (MSMg01no461_d21.b1)MSMg01-461D21.TJ (MSMg01no461_d21.g1)
ACCAG546411AG546412
length793747
length of high quality
(start - end)
411 (51 - 461)482 (76 - 557)
definitionCHROMAT_FILE: MSMg01no461_d21.b1 PHD_FILE: MSMg01no461_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:46 2005CHROMAT_FILE: MSMg01no461_d21.g1 PHD_FILE: MSMg01no461_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCTTTGTTTTGCCCTGTACCCCATTTTTAATAGGGATATTTGTTTCTC
TGAAGTCTAACTTCTTGAGTTCTTTGTATATATTGGCTATTAGCCCTCTA
TTGGATGTAGGATTGGTAAAGATCTTTCCCAGTCTGTTGGATAACTTTTT
GTCTTATTGACAGTGTCCTTCGCCTTACAGAAGCTTTGCAATTTTAAGAG
GTCCCATTTATCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTTTGT
TCAGGAATTTTCCCCCCTTTTTTATATGTTCAAGGCTCTTCCCCGCTTTC
TCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTTGATCCA
CTTGAACTTGAGCTTTGTACAGGAGAGAATGGTTTGCTTTGCATTCTTCT
ACATGTTAACTGCCAGTTGAGCCAGCACCATTTGTTAAAAATGCTGTCTT
TTTTCCCCCTGGATGGTTTTAGCTTCTTTGTCATAGATTATGCGACCTAT
TTGTTTGTGGGTTTCTTTTCTGGCACTTTTTGTTCTATTCCCTTGGCATA
CCCTGCCTTTTTCTGTGACTTTTTTTCTGTTAATTCCTTTATCTCCTTTG
CCTCTTTTCCTTATTTTTTCTTTTACTCCGGGGAGTTTGTTTTCCCTCCT
CTATTACGTCTCTTCATCCTCGTTACTACTCATTCTTTCCCTTATTCTTC
TACTCTCCTTCTCTCTTCACTTATCACTCTTCCTTTCCTTTTT
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTGGCCCTACATTTTTTGGTTAG
TAGAAGACTTTTAATTACTGCATTGTTTTCATTAGGAGCTAAGGGTCTAT
TTAAATTGCTCATTTGATTTTGATTTTACTTTAGTAATGGACAAAGGGGT
AGGAAAGAACAATCAGAGATTGTCTTCTGGGTTTAGGAGTGATAAATAGA
GAGACAGCTAGGAATAGATTGACAAGAACACAAACATCACTGTTCAAAGC
TAGGATAAAGAGAAAATCTTTCTATAATGATAAGAAAGTACATGTAAAGC
TAAGTACAGAGATGCAAAGACAAAACTGAGGGCAGGTTTCCTGTTATTTT
TAAAACTATAAAGCATTGAGACTCTTAAATAATAATTCTATGACTTTTAA
TTTAACAAAACTTTTTCAAGTAAATGAAAAGCAGAGCTTCTCTTCACATG
CAAAACATTGCTTTACCAGCAGGCCTCTGCACCAAAGGATATTAAAGAAA
GTCTGTAAGACCAAAAGCCCAGGACATCTGACTAAAATACAGATTTTTTT
TAAAGGATAAATATAATCCCGAAATGGTTAAATGTGTTAATAAACCCCAT
AAAAGATGTTTCTTGTTGATTTACCATTTTTTCCGGATGGCCTGGTTAGT
TAAAAAGGATCAAACTCTTGGTAAATTTTAAATACCCTCAGGGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d21.g1 MSMg01no461_d21.g1 CHROMAT_FILE:
MSMg01no461_d21.g1 PHD_FILE: MSMg01no461_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:46 2005
         (482 letters)



>mm_chr14_36752180_36753061
          Length = 882

 Score =  886 bits (458), Expect = 0.0
 Identities = 476/482 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggccctacattttttggttagtagaagacttttaattactgcattgttttcattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aactggccctacattttttggttagtagaagacttttaattactgcattgttttcattag 735

                                                                       
Query: 61  gagctaagggtctatttaaattgctcatttgattttgattttactttagtaatggacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gagctaagggtctatttaaattgctcatttgattttgattttactttagtaatggacaaa 675

                                                                       
Query: 121 ggggtaggaaagaacaatcagagattgtcttctgggtttaggagtgataaatagagagac 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cgggtaggaaagaacaatcagagattgtcttctgggtttaggagtgataaatagagagac 615

                                                                       
Query: 181 agctaggaatagattgacaagaacacaaacatcactgttcaaagctaggataaagagaaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agctaggaatagattgaaaagaacacaaacatcactgttcaaagctaggataaagagaaa 555

                                                                       
Query: 241 atctttctataatgataagaaagtacatgtaaagctaagtacagagatgcaaagacaaaa 300
           |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atcaaacaataatgataagaaagtacatgtaaagctaagtacagagatgcaaagacaaaa 495

                                                                       
Query: 301 ctgagggcaggtttcctgttatttttaaaactataaagcattgagactcttaaataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgagggcaggtttcctgttatttttaaaactataaagcattgagactcttaaataataa 435

                                                                       
Query: 361 ttctatgacttttaatttaacaaaactttttcaagtaaatgaaaagcagagcttctcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttctatgacttttaatttaacaaaactttttcaagtaaatgaaaagcagagcttctcttc 375

                                                                       
Query: 421 acatgcaaaacattgctttaccagcaggcctctgcaccaaaggatattaaagaaagtctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acatgcaaaacattgctttaccagcaggcctctgcaccaaaggatattaaagaaagtctg 315

             
Query: 481 ta 482
           ||
Sbjct: 314 ta 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)