Query= MSMg01no462_b14.b1 MSMg01no462_b14.b1 CHROMAT_FILE:
MSMg01no462_b14.b1 PHD_FILE: MSMg01no462_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:58 2005
(553 letters)
>mm_chr14_80758025_80758977
Length = 953
Score = 920 bits (476), Expect = 0.0
Identities = 523/549 (95%), Gaps = 17/549 (3%)
Strand = Plus / Plus
Query: 5 gaattcaaacttccttttctaaagcaacattctgcctagaacaccgcaagttcaaagaaa 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaacttccatttataaagcaacattctgcctagaacaccgcaagttcaaagaaa 264
Query: 65 gaagtggcctatacacatttgccacaagacttgctgaattctagcgtgtgatctcagttc 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 gaagtggcctatacacatttgccacaagacttgctgaagtctagcgtgtgatctcagttc 324
Query: 125 tcccatcaagatccagatgaaggattgtggaaattagaatgggaacctcttccaccagtc 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcccatcgagatccagatgaaggattgtggaaattagaatgggaacctcttccaccagtc 384
Query: 185 atttcacggtttccttggttttctgcaggtatttcaaaaagaggactggagtggttttac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttcacggtttccttggttttctgcaggtatttcaaaaagaggactggagtggttttac 444
Query: 245 tacagctatgctcactgagaatcatcttattcagcttctgttttcagctctttccgaaaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 tacagctatgctcactgagaatcatcttattcagcttctgttttcagctctttccggaaa 504
Query: 305 atctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 364
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctctctctctctctctctctctctctctctctctctctctctctc------------- 551
Query: 365 cctctctctctctccccatgtgtgaggtgcgctgtgctgagatggtacccttggccttcc 424
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 552 ---ctctctctctccccatgtgtgtggtgcgctgtgctgagatggtacccttggccttcc 608
Query: 425 acatgccaaggaaatgctccatcattgactctattaccatcttaattagaagggtgaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acatgccaaggaaatgctccatcattgactctattaccatcttaattagaagggtgaaat 668
Query: 485 gtcatagatgctattttcttgactcttgnatttctaaatccaaaaataattacactaata 544
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 669 atcatagatgctattttcttaactcttggatttctaaatccaaaaataattacactaata 728
Query: 545 aagagaatt 553
| |||||||
Sbjct: 729 a-gagaatt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_b14.g1 MSMg01no462_b14.g1 CHROMAT_FILE:
MSMg01no462_b14.g1 PHD_FILE: MSMg01no462_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:58 2005
(562 letters)
>mm_chr14_80924787_80925748
Length = 962
Score = 1011 bits (523), Expect = 0.0
Identities = 547/561 (97%), Gaps = 11/561 (1%)
Strand = Plus / Minus
Query: 1 ttacagaggtccaacttccatttccagaattcacttaccagcccacaacacctaacaatt 60
||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 897 ttacagaggtccaacttccatttccagaattca----------ca-aacacctaacaatt 849
Query: 61 tgagagcctcttctggcctctgcaggcaaagggtctcatctaatgcatacacggaggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tgagagcctcttctggcctctgcaggcaaagggtctcatctaatgcatacacggaggcaa 789
Query: 121 aactaatgcacagcaaataaaaataaagaaaccattaagaaactactgtgtagaaattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aactaatgcacagcaaataaaaataaagaaaccattaagaaactactgtgtagaaattca 729
Query: 181 acatttcctctttctgtcctgtctaggtgctccatcaattatgtgttagttgccataagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acatttcctctttctgtcctgtctaggtgctccatcaattatgtgttagttgccataagt 669
Query: 241 gaagaataatcttccttccttggtctcccaattcaaatataaatctcttctggaaatact 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaagaaaaatcttccttccttggtctcccaattcaaatataaatctcttctggaaatact 609
Query: 301 ttcaaagacatattcataaacaaggttttcaactatctagaatccctaaattcattcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttcaaagacatattcataaacaaggttttcaactatctagaatccctaaattcattcaac 549
Query: 361 tttacatctaaaaatttttgacatataaacaaacaaaacttaaagaaattctaagcacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttacatctaaaaatttttgacatataaacaaacaaaacttaaagaaattctaagcacaa 489
Query: 421 ggtaggtgttcaatagaaatggatgaataaatatacaagtgaacaagggtgtgtgaaaat 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggtaggtgttcaatagaaatgaatgaataaatatacaagtgaacaagggtgtgtgaaaat 429
Query: 481 tgcttctgtattagatgcatgaaaaaatagacacgcatatgatttaactaattttgatat 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 428 tgcttctgtattagatgcatgaaaaaatagagacgcatatgatttaactaattttgatat 369
Query: 541 tataattttatttgaatcttg 561
|||||||||||||||||||||
Sbjct: 368 tataattttatttgaatcttg 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
