BAC Information

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BAC

Clone NameMSMg01-462F17
Chromosome14 (Build37)
Map Location 111,474,584 - 111,475,086
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462F17.T7 (MSMg01no462_f17.b1)MSMg01-462F17.TJ (MSMg01no462_f17.g1)
ACCAG547263AG547264
length770770
length of high quality
(start - end)
463 (74 - 536)503 (79 - 581)
definitionCHROMAT_FILE: MSMg01no462_f17.b1 PHD_FILE: MSMg01no462_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:20 2005CHROMAT_FILE: MSMg01no462_f17.g1 PHD_FILE: MSMg01no462_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCAGTATTTGTACATACAATAAATATTTTTTCTGATTTCTCAA
TGCTATAAATGGTAAGTTTATCCTCTAGAGAATTATTTCTACATATGTGT
TTTGGCGATTCCAAATAAAAATTAACATACACTCTATTTTTTATCATTAT
AATGGGTTTTTTGAAGGAAAGCTACAGTCACATACACTGTTATGTATATT
AGACTAATTCATTTAGGAACTGTGAGTTATATCACATAAATAAGATGAAT
CCCCATACATAAAGTATTTTTGCAACTCAAATCATGTAATGATGGGTTTA
TGAAAAATGTCATTGTGTTAAATGATTTTTCTTCTTATTTTTGTTCTCTG
CATTTACTCTTTATAGAAAATTGATATTGTTAAGCTCTGCAGATTTAAAA
ATATTTTAATTACATATATGTATATTATGTGATGTAGATATTTATGATGT
GAAGTCAATAGGAAGATTTTCAGTCTTTCGATCTTAATCTGTAAAACTGA
TCTTGCACACAAGTTTCGTGTGTGATCTGTCTTAACCTTGTGTTTTGGCA
CAAACAAGGCTTGAGGGATTCCTTCATGGCTTCCTTCGTTCGGGGTTGGC
TCTGCAAACCCCTTGGGGTCCGGGGCTCACCCTGGTTTATTTTATTACTG
GGATGTGAAAAATTGCTAATATTTATTCGGTGGACACTCCTTTGAATTTC
ATCTTTTTTTCTTGCCTCCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGAATTTAAAATTTTTAA
AAATATTCAAAGAAAGTAAAACGTGTGCTAAACTAAGTCCATGTATCTCT
GAGTTAATCTCAAAGCTGTGGAACCGTGTTCCACAGGTGTTTCACTGACT
AAATTCTCTAGAGCACTTTTCTCAAAAGAAGCCTTCATCATTAAGAGTTG
CCTGTCTACAATCTACATTAGACACCAACATCAATATAGTGACCAGTCTT
TACTAGGCTGAGCCACATACACAACTACACAAAAATACCTTAAGTATCTT
TATATTGAGCTAGAAATAATCAATAAAAAAGTACTTACAATTCACTGCTT
TTTTCCTTTTATAACATTAATACATCATTTCTATAACTACATACCTGCTT
TATTCTTGTCTGTTAAACTAAAATGAAAAACATAAACACAAATATATAAA
GAAATAAAGTATCATTTGACAGCAAGTCTATTTTGTGTCTTTAACACCCA
TAAACTAGTTATTTATTTTTTAAATAATGTTTTGTGAGTGACTTAGTTTC
ATTTGATAATTAAGTTATAAAAAGTAAGAAAATTGGTTTAAAGCCCATGA
AATTGTAAATTTCTCCTATGGAAAATAAAAACCTAAATTCCCATTTTTTT
ACCCCATAGAAAAAAAATTTTTATTTATTAGGAGATTATTTGGTGGAAAA
GGTAAAATTCCCCCCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_f17.g1 MSMg01no462_f17.g1 CHROMAT_FILE:
MSMg01no462_f17.g1 PHD_FILE: MSMg01no462_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:21 2005
         (503 letters)



>mm_chr14_111474355_111475257
          Length = 903

 Score =  965 bits (499), Expect = 0.0
 Identities = 502/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagaatttaaaatttttaaaaatattcaaagaaagtaaaacgtgtgctaaactaagt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcacagaatttaaaattttttaaaatattcaaagaaagtaaaacgtgtgctaaactaagt 673

                                                                       
Query: 61  ccatgtatctctgagttaatctcaaagctgtggaaccgtgttccacaggtgtttcactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccatgtatctctgagttaatctcaaagctgtggaaccgtgttccacaggtgtttcactga 613

                                                                       
Query: 121 ctaaattctctagagcacttttctcaaaagaagccttcatcattaagagttgcctgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctaaattctctagagcacttttctcaaaagaagccttcatcattaagagttgcctgtcta 553

                                                                       
Query: 181 caatctacattagacaccaacatcaatatagtgaccagtctttactaggctgagccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caatctacattagacaccaacatcaatatagtgaccagtctttactaggctgagccacat 493

                                                                       
Query: 241 acacaactacacaaaaataccttaagtatctttatattgagctagaaataatcaataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acacaactacacaaaaataccttaagtatctttatattgagctagaaataatcaataaaa 433

                                                                       
Query: 301 aagtacttacaattcactgcttttttccttttataacattaatacatcatttctataact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagtacttacaattcactgcttttttccttttataacattaatacatcatttctataact 373

                                                                       
Query: 361 acatacctgctttattcttgtctgttaaactaaaatgaaaaacataaacacaaatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acatacctgctttattcttgtctgttaaactaaaatgaaaaacataaacacaaatatata 313

                                                                       
Query: 421 aagaaataaagtatcatttgacagcaagtctattttgtgtctttaacacccataaactag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagaaataaagtatcatttgacagcaagtctattttgtgtctttaacacccataaactag 253

                                  
Query: 481 ttatttattttttaaataatgtt 503
           |||||||||||||||||||||||
Sbjct: 252 ttatttattttttaaataatgtt 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)