BAC Information

Click to search

BAC

Clone NameMSMg01-462I16
Chromosome14 (Build37)
Map Location 72,859,566 - 72,860,071
singlet/doubletsinglet
Overlap geneLOC668482
Upstream geneLOC100043136, LOC668477
Downstream geneLOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462I16.T7 (MSMg01no462_i16.b1)MSMg01-462I16.TJ (MSMg01no462_i16.g1)
ACCAG547404AG547405
length803767
length of high quality
(start - end)
385 (47 - 431)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no462_i16.b1 PHD_FILE: MSMg01no462_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:35 2005CHROMAT_FILE: MSMg01no462_i16.g1 PHD_FILE: MSMg01no462_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTTCATTTGCATATTGTTCTTTCAATTTGTTAAAAGATTACTT
TTTTGCTTTTTCTAGAGCTGAGTTTCCCTCCTTGTGTTGGAGTTTTCCCT
TTATTATACTTTGATGGGCTGGATTTGTGGAAAGATAATTGTGTAAATTT
GGTTTTGTCTTGGAATACCCTTGTTCCTCCACCTATGGTAATTGAGAGTT
TTGCTGGGTATAGTAGCCTGGGCTATCATTTGTGTTCTCTTAGGATCTGT
ATGACATCTACCCAGGATCTTCTGCCTTTCACAGTCGCTGAGGAGAAGTC
AGGTATAATTCTGATAGGTCTGCTTTATATGTTACTTCACCTTATTGCCT
TTTTTTTTTTTTTTTTTCCCTTTTTTTTTGGGTTTTGACATTCGGTTTCT
TGCTTTCATCCCCCTCTCTTGTTCTGCACTTCTCTTTGCTCTTCCTGCTG
GTCCTTCTTTCTCTTCAATCCTTTTTTTCTTTGCCCTCCTAATTGCTTGT
CTTTATCGTCTCTCTCTCTCCTTCCTTCTGGCCTTCTTCTCTTTGGTTTC
TTACTTTCTCTTTCTTTTCTTTTTCTTCCCTCTTTTCTTCTTTTCTCCTT
CCCCCTTTTTACTTTTTTTCATCTCTTCTCTTTCACCTTTTACATTCTCT
CTTTTTCCTCCTTTTCCTCCTTTTTTTAATCTTCCTCTCTCTTCTTTATT
TTTCATTTTTCTCCCCGTTCCTTTTCTCTTTCCTTCCCATTCCTTTATAT
TCA
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGGTAGCCTTGGGAGCCCCAGGTC
TCAGGTTTAGTCTGGAGTCAGACCAGTGGGACCAGTATAGTGGGTGACTC
AACTGAGTTTCTGGGACCAGAGCAGGTCACACATATACATGTAAGAGGAA
TTCCACAACTTAAACACGTTCTGGCCCTATGATGGGAACCAGAAGGGGAA
CGCAGGGAGATGGTTCTGAGGAGAGTCAGCATCTTTCAGGTAGGCTCTAC
TCCCTGCAAGTGCTCCCAGGTCTCAGTGTCCCTGGGCAGGTCGGGCACCT
CATCATCCAACACTCAAGTGAAGTTCCTGGGGTCATGGTATCTCTAGCCC
ATTGAACAGTGGTAGCAAACGCACTGCACACATCTCAGATGCTACTGGCC
AATGGTGGCCGGCCAAAACCAGAGAGACTCAGGTCTGCAGGGCCTTCAGA
GGTAGCAGGCACTTTTCTGACTGCTAGGGCATACCCTGAATCCCCCAGAG
GGAGCCTTGATGTTATATACAGCAGTATCTAAAAGGCAGGATATTCCCAG
CCCACATACCTAGGGAGACAGCCCTTGGCCCGAAGTTTTTCAGGGAGCTG
ATAAGCGTTAAGGATTTAGGATTCGCCTGTATTTGGGAGTTTTTCGGAAC
CTCTAATTGGGATTCCAATTCTCCCCCTTTCCCTATGGACCCCTCTTTCC
TCGTTGGTTAAAATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_i16.g1 MSMg01no462_i16.g1 CHROMAT_FILE:
MSMg01no462_i16.g1 PHD_FILE: MSMg01no462_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:35 2005
         (506 letters)



>mm_chr14_72859366_72860271
          Length = 906

 Score =  893 bits (462), Expect = 0.0
 Identities = 495/506 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtagccttgggagccccaggtctcaggtttagtctggagtcagaccagtgggacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccaggtagccttgggagccccaggtctcaggtttagtctggagtcagaccggtgggacca 260

                                                                       
Query: 61  gtatagtgggtgactcaactgagtttctgggaccagagcaggtcacacatatacatgtaa 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatagtgggtgactcagctgagtttctgggaccagagcaggtcacacatatacatgtaa 320

                                                                       
Query: 121 gaggaattccacaacttaaacacgttctggccctatgatgggaaccagaaggggaacgca 180
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaattccacaacttaaatatgttctggccctatgatgggaaccagaaggggaacgca 380

                                                                       
Query: 181 gggagatggttctgaggagagtcagcatctttcaggtaggctctactccctgcaagtgct 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gggagatggttctgaggagagtcagcatctttcaggtaagctctactccctgcaagtgct 440

                                                                       
Query: 241 cccaggtctcagtgtccctgggcaggtcgggcacctcatcatccaacactcaagtgaagt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaggcctcagtgtccctgggcaggtcgggcacctcatcatccaacactcaagtgaagt 500

                                                                       
Query: 301 tcctggggtcatggtatctctagcccattgaacagtggtagcaaacgcactgcacacatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctggggtcatggtatctctagcccattgaacagtggtagcaaacgcactgcacacatc 560

                                                                       
Query: 361 tcagatgctactggccaatggtggccggccaaaaccagagagactcaggtctgcagggcc 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagatgctacttgccaatggtggccggccaaaaccagagagactcaggtctgcagggcc 620

                                                                       
Query: 421 ttcagaggtagcaggcacttttctgactgctagggcataccctgaatcccccagagggag 480
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 621 ttcagaggtagcaggcacttttctgactgcaagggcataccttgaatcccccagagggag 680

                                     
Query: 481 ccttgatgttatatacagcagtatct 506
           |||||| ||||||| |||||||||||
Sbjct: 681 ccttgaggttatattcagcagtatct 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)