BAC Information

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BAC

Clone NameMSMg01-463L01
Chromosome14 (Build37)
Map Location 114,432,092 - 114,628,668
singlet/doubletdoublet
Overlap geneLOC668791
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L01.T7 (MSMg01no463_l01.b1)MSMg01-463L01.TJ (MSMg01no463_l01.g1)
ACCAG548282AG548283
length838789
length of high quality
(start - end)		272 (48 - 319)381 (81 - 461)
definitionCHROMAT_FILE: MSMg01no463_l01.b1 PHD_FILE: MSMg01no463_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:12 2005CHROMAT_FILE: MSMg01no463_l01.g1 PHD_FILE: MSMg01no463_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,432,092 - 114,432,340)(114,628,303 - 114,628,668)
sequence
NTTTTTCTTTTATTTGTGGTCGCTAAACGACTCCTATTTCGAGACATCCG
CGGAATTCTTGAAGTTTTACTGAAACAACACTAGTTAGTAACATGAAAAC
GTGCAAAACCAGCAAAGTAATGAGGAAAGTTAATTATATGGCTAAATTCT
ACTGTAATGCTCTATTAGGGAGCTATAAATCACTTATAACATTAAATAAA
AGGTTCAAAGAAAGAACTAGAGATATTATTGAGTAATAGAGTGCTTGCTC
GCTGAAAAGGCATGGAGTTTGAGTTTCAAAACAATTATAAAGAGGAGTTA
AAGATGGAAGTGCTAAAAATTATATTTATAGTTGCTTGTGTCCGCATCAC
TATAATTATTTATTTATGTTTTTCTTTTTTTTTCTTCTCCTTATCATCCT
TTTCCCTATAATACAACGTCCCCCCCCCCCTCCTTTTTATAATTTTTTCT
CTCCCCTCTTTTACTTCTCATTTTTTTTTTTATCTTTCCCCCCCCTCACT
CCTCATTATATTCTCATAAATTTTTTACTCCTCTTCCTCTTTCCCTTTTT
CTTCCCACTCTCTTTCACTTCTTTTCTTCTCCCTTTCTCCTCTCCACTCA
TCTTTTTCCACTCTTCACCCTTCCCTTTTTTTTCTCTCTTTTTTTACTCC
CCTTTCTTTTTCCCCTTCATCTCCATCTCTCTTCGTATCCTTCACCTTTT
TTTTTTCAATCCCCCCCACTTTTTTCACTTCCTTACTCTATTAACTCACC
CCCTCCCTCACCTTCTCACTTCTTCTTTCCTTCCTTTTACCTCTTCTTCA
TCAAACTTCCTTCCCTCTCTCTTTCCCCTTTCCTTTTT

NNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTACTCTTTCTAAAGC
CTGGATTTGTATTTTTAAAGAAGCTTTAGGTTCATAGCAAAGTTTGAGAA
TAAAGTGCAGTGATTTCTCATGTTCTTCCTCCCTTTACATATACATAGTT
TTTCCTGCAGCAAAATTCCCTACCAAATCTGTATGTGTACTACAGCTAAT
GAACTAACAGACACTTCATATACATAGCTTACACTGGGTTTTCTCAGGCC
TCTGGGCACACTGTTAAAGAAAGTATAGGTGACATGACATGGAACCGATA
GCAAAGACATCTTCCATTTGAAAACGTAGACGGTAAATTCTGTGCTAGAT
TCTCCAGTCTAGTACCTCTTGGCCCCTTATCCCAATTGGACTAGATTTTT
ATAGATTAGTGCAAACTAGAATATTTTAAGAAGTAATTTGTAAGTACTAA
CCTTCTCGATACTTTAGTTGTTCATGTATGAATATTAACTTATCTTCCAT
TTATCTATAGCTATCATCTTTCATTTCTCCTTCATTACTTTATGCCGCTT
CTCTCTACTTCTAATCTTGTTTTTTTTATTTTACGCCTCTACTAATTATT
TCTTTTAAATTCTCCGGATTATGCTCTCTGCATCCTGTTCACCCTATTAC
TTTTCTTCTTTTCGATTCTTATTCGGTATTCTTTGCTATCTGTTGGCTCG
TGCTTCACCTTCATCCGCGACGTTTTCTCATTTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l01.b1 MSMg01no463_l01.b1 CHROMAT_FILE:
MSMg01no463_l01.b1 PHD_FILE: MSMg01no463_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:12 2005
         (272 letters)



>mm_chr14_114431869_114432540
          Length = 672

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgaaacaacactagttagtaacatgaaaacgtgcaaaaccagcaaagtaatgaggaaagt 83
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 224 tgaaacaacactagttagtaacatgaaaacgtgcaaaaccagcgaagtaatgaggaaagt 283

                                                                       
Query: 84  taattatatggctaaattctactgtaatgctctattagggagctataaatcacttataac 143
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 284 taattatatggctaaattctactgtaatgctctattagggagctataaatcaattataac 343

                                                                       
Query: 144 attaaataaaaggttcaaagaaagaactagagatattattgagtaatagagtgcttgctc 203
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 attaaataaaaggttcaaagaaagaactagagatataattgagtaatagagtgcttgctc 403

                                                                       
Query: 204 gctgaaaaggcatggagtttgagtttcaaaacaattataaagaggagttaaagatggaag 263
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 404 gctgaaaaggcatggagtttgagtttcaaaacaactataaagaggagttaaagatggaag 463

                    
Query: 264 tgctaaaaa 272
           |||||||||
Sbjct: 464 tgctaaaaa 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no463_l01.g1 MSMg01no463_l01.g1 CHROMAT_FILE:
MSMg01no463_l01.g1 PHD_FILE: MSMg01no463_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:12 2005
         (381 letters)



>mm_chr14_114627888_114628668
          Length = 781

 Score =  654 bits (338), Expect = 0.0
 Identities = 359/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  aaagcctggatttgtatttttaaagaagctttaggttcatagcaaagtttgagaataaag 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aaagcctggatttgtatttttaaagaagctttaggttcatagcaaagtttgagaataaag 722

                                                                       
Query: 76  tgcagtgatttctcatgttcttcctccctttacatatacatagtttttcctgcagcaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 721 tgcagtgatttctcatgttcttcctccctttacatatacatagtttttcctccagcaaaa 662

                                                                       
Query: 136 ttccctaccaaatctgtatgtgtactacagctaatgaactaacagacacttcatatacat 195
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 661 ttccctaccaaatccgtatgtgtactacagctaatgatctaacagacacttcatatacat 602

                                                                       
Query: 196 agcttacactgggttttctcaggcctctgggcacactgttaaagaaagtataggtgacat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agcttacactgggttttctcaggcctctgggcacactgttaaagaaagtataggtgacat 542

                                                                       
Query: 256 gacatggaaccgatagcaaagacatcttccatttgaaaacgtagacggtaaattctgtgc 315
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 541 gatatggaaccgatagcaaagacatcttccatttgaaaacgtaaacggtaaattctgtgc 482

                                                                       
Query: 316 tagattctccagtctagtacctcttggccccttatcccaattggactagatttttataga 375
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 481 tagattctccagtctagtacctcttggtcccttatcccaattggacaagatttttataga 422

                 
Query: 376 ttagtg 381
           ||||||
Sbjct: 421 ttagtg 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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