BAC Information

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BAC

Clone NameMSMg01-464I08
Chromosome14 (Build37)
Map Location 66,782,169 - 66,782,405
singlet/doubletsinglet
Overlap genePtk2b
Upstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2
Downstream geneLOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I08.T7 (MSMg01no464_i08.b1)MSMg01-464I08.TJ (MSMg01no464_i08.g1)
ACCAG548917AG548918
length748755
length of high quality
(start - end)
143 (75 - 217)236 (77 - 312)
definitionCHROMAT_FILE: MSMg01no464_i08.b1 PHD_FILE: MSMg01no464_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005CHROMAT_FILE: MSMg01no464_i08.g1 PHD_FILE: MSMg01no464_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGAGTTTACCCCCAATGGCATAGTCCCAAAACCAGTTAGATG
CAGAGGAGGGCTCCTGGTAGGGATGGTGTATCATGAGTTGGGGCTCAATG
GCTTGCTGACTTGTTTATGATGATGTTTGACTAGAAGACATGTCTCAGGA
GTGACTTCACGTTAGAGCAGGAGGGAGAAAAGTGAGATGACCCACCTACC
AGTACAATCTGGAAGTCTTATTTCTTCATAGTGGAGCTGATTTCCACTAT
GTGGGTCCCATGAACTTATTTTTTTTCATCAAGCTTAGCAGNAGATCTCT
TTTCTTTTCCAGGTGAGCTATCTTTCTGACCTTTACTTATTTTTTTCCAA
GATATCTATGTCATCTGTCCCTCCTTCTGAGATCCTATGGTCTAGATGTC
CATCAGTCACCCTTCGGAAATCCTATAGTCATCCTACAACCGCCACTCTC
AACCTTTCCAATGCTGTGATCCCTCTTATTCCTTCCCTCATGGTGTTGGT
GATCTCACCAACTAATTGATTTCTGTTTGCTTCTTCACCATTGTAACCGT
GTTGTATTGTTTCTTTCTCCTCGCTGCTTTCCCGCACACCTATTCGTCTT
TCTTTTCTTCCACTTTTTCTTTCTGTGCCCTCCACCTTTCCTTTTTCTTC
TTCGTCCAGTTCCCCTTTTTTCGCTCTTTTTCCCCCTTTGTTTTTTTG
NCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATCTATGGTGCATTCTGTAAC
CACACACCCCTGGGCCACTGAGGGATAACTCTGTGTATATGTCTGCATTC
ATTATCTGCAAGCTTATTGTAACCCATGTCACAACTATGACACATAACCC
TTTTCCCAAGGGTCCTGAGGTCCCCTAGTCTCGGGAGCTGAGCTGTCTGT
GAGCATCTACCCATGTGAAGAGCATTGTGTAGGAGGTGTGTCTGGCAGAG
GAGAGGCCACGCTTTTTTGTTACACCTCTTCGGCAGGGAAATGATACAAC
CCATGTTTTATGTGCCACAGTAGAGCAAGTCTGCACCCCCATGGTGTGCT
CTCGCCCTTTTTGTGNGCTCCTGTTTGTAGCAGCTAATTGTCATCCTCTC
GCCTTGTCCCTGTGCCTTGTGCTTCTTTGCTTCTCATGAATAGGTCCCTG
AGGGTCTGTGTGCCAGCTCTCCTACGCTTACCAGCCCTATGGAGTATCCA
TCTCCAGTTAACTCGCTGCACACCCCACCTCTCCAACGTGACAATGGCTT
CAAGCGCCACAGCATGTGGTCAATAAGACTCTGCATGCTTGCCTTTTTTT
TTTTCCTCGAAATCTGTCCCATCAATTCTCCCCCGGCAAATCTCCTCCGG
CCATACTTCCTCTTTTTCACCCTCTCACCCTTCTTTCACCTTCTTCCTCT
TTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i08.g1 MSMg01no464_i08.g1 CHROMAT_FILE:
MSMg01no464_i08.g1 PHD_FILE: MSMg01no464_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:19 2005
         (236 letters)



>mm_chr14_66781969_66782605
          Length = 637

 Score =  412 bits (213), Expect = e-120
 Identities = 231/237 (97%), Gaps = 1/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatctatggtgcattctgtaaccacacacccctgggccactgagggataactctgtgt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catatctatggtgcattctggaaccacacacccctgggccactgagggataactctgtgt 378

                                                                       
Query: 61  atatgtctgcattcattatctgcaagcttattgtaacccatgtcacaactatgacacata 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 377 atatgtctgcattcattatctgcaagcttatcgtaacccatgtcacaactatgacacata 318

                                                                       
Query: 121 acccttttcccaagggtcctgaggtcccctagtct-cgggagctgagctgtctgtgagca 179
           ||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||
Sbjct: 317 acccttttcccaagggtcctgaggtcccctagtctccaggagatgagctgcctgtgagca 258

                                                                    
Query: 180 tctacccatgtgaagagcattgtgtaggaggtgtgtctggcagaggagaggccacgc 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctacccatgtgaagagcattgtgtaggaggtgtgtctggcagaggagaggccacgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space:   142556
Effective search space used:   142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)