Query= MSMg01no465_j14.b1 MSMg01no465_j14.b1 CHROMAT_FILE:
MSMg01no465_j14.b1 PHD_FILE: MSMg01no465_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:46 2005
(439 letters)
>mm_chr14_104276211_104277049
Length = 839
Score = 739 bits (382), Expect = 0.0
Identities = 428/448 (95%), Gaps = 9/448 (2%)
Strand = Plus / Minus
Query: 1 ctggaaagcctgtgttcatccgttacagttcagctccgttagtaatgtccctgtgaaaac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 479 ctggaaagcctgtgttcatccgttacagttcagctccattagtaatgtccctgtgaaaac 420
Query: 61 tgtcctacatgcatcaccaactttatctgcttccctgctgtagactcagtgtcagagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtcctacatgcatcaccaactttatctgcttccctgctgtagactcagtgtcagagcct 360
Query: 121 agcagcatagcatctgcaactcagagttcagtaagtacatgaggcatgaagaaatgaata 180
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 agcagtatagcatctgcaactcagagttcagtaaatacatgaggcatgaagaaatgaata 300
Query: 181 actgactatctataacaagagtaaatatcagcagtgtacactccaaaagaacttaagact 240
|||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 299 actgactatctataacaagaataaatatcagcagtatacactccaaaagaacataagact 240
Query: 241 gtacataagaattataagaccaatgcaccagcataacaa--------aaagaaacatcta 292
|||||||||||||||||| ||||||||| | |||||||| ||| ||| |||||
Sbjct: 239 gtacataagaattataaggccaatgcactaacataacaacaacaacaaaaaaaaaatcta 180
Query: 293 aggaagtgtgttgcatcattttgtttacatctaaatagtttcactgctttatcacattta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aggaagtgtgttgcatcattttgtttacatctaaatagtttcactgctttatcacattta 120
Query: 353 aaagctacacaatatttttt-aaaagtaggaatcctaaaatatctttaatgtccaaagca 411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaagctacacaatatttttttaaaagtaggaatcctaaaatatctttaatgtccaaagca 60
Query: 412 gtctcatttgtaacttcactgagtcttc 439
||||||||||||||||||||||||||||
Sbjct: 59 gtctcatttgtaacttcactgagtcttc 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_j14.g1 MSMg01no465_j14.g1 CHROMAT_FILE:
MSMg01no465_j14.g1 PHD_FILE: MSMg01no465_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:46 2005
(433 letters)
>mm_chr14_104092877_104093709
Length = 833
Score = 756 bits (391), Expect = 0.0
Identities = 421/431 (97%), Gaps = 2/431 (0%)
Strand = Plus / Plus
Query: 1 agttttaaagcataaacttgaggagacttggcaactgtggtggtctcatacactgtggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttaaagcataaacttgaggagacttggcaactgtggtggtctcatacactgtggcg 260
Query: 61 tccccaacataaacggggttcgtgccatttaacaggtgcaccacaggtatttccctgctc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccaacataaacggggtgcgtgccatttaacaggtgcaccacaggtatttccctgctc 320
Query: 121 attccatggaatgaaggaatgtgttcaatggaggaactgctgtgtccagttaagggagta 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcgatggaatgaaggaatgtgttcaatggaggaactgctgtgtccagttaagggagta 380
Query: 181 gtcccctgtccctgggaacaggtggatggcaggaatgggcatcaggagatagataggcct 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gtcccctgtccctgggaacaggtggatggcaggaataggcatcaggagatagataggcct 440
Query: 241 ggtggtgtgttgggcccgtagcctggaggcttaatctgacccatgttcagaatttgaggc 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggtatcttgggcccgtagcctggaggcttaatctgacccatgttcagaatttgaggc 500
Query: 301 tttggggtggcagtgacagagccaagctggggcttctcaaatgtgtccttgtgttctaga 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggggtggcggtgacagagccaagctggggcttctcaaatgtgtccttgtgttctaga 560
Query: 361 agagtgcggcagggtctgtgggaaccag-ctaagtgtgttttgtggagtgggtggcaaaa 419
||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct: 561 agagtgcagcagggtctgagggaacc-gactaagtgtgttttgtggagtgggtggcaaaa 619
Query: 420 atgagctctga 430
|||||||||||
Sbjct: 620 atgagctctga 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
