BAC Information

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BAC

Clone NameMSMg01-466K08
Chromosome14 (Build37)
Map Location 97,551,507 - 97,551,997
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K08.T7 (MSMg01no466_k08.b1)MSMg01-466K08.TJ (MSMg01no466_k08.g1)
ACCAG550544AG550545
length738745
length of high quality
(start - end)
441 (52 - 492)491 (86 - 576)
definitionCHROMAT_FILE: MSMg01no466_k08.b1 PHD_FILE: MSMg01no466_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:12 2005CHROMAT_FILE: MSMg01no466_k08.g1 PHD_FILE: MSMg01no466_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGGATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAAAGTTCCCTATTCATTCATGAAATTGTCCAAGAACA
ATTCAGTAAAAGTTAAATATAATGTCAAGGAGGGACAGTCTCTCCTCAAA
GCCCAGGCCATTGCATGATCAATGAAGGGCAGGGTCAGCTCTCCTGCTCT
CAGGCCCATGGGGACAGCTATCTCAAGCTGCTCAGGCAGAGTGAGGCTGG
CTCTTCTAAGGTACATGGAAGTAAAGGTCCTAAGCTCCAAGACCTCTGAG
ACACAGGACAACAACAGCTGCCCTCGTGAGCGTCGCAGTGAACAAGTATT
GATAATGTAGCAGAAGCCAGAGGGATGGAATCATATCACTGGCTCACTGC
AATGAACATTTGCAAGTAGAGCTGTTTAAGCAATATGGAGTACTGTGTGA
TACATACTGCAGTTTACACTGTGATATTTTGTTGTTTTGGATGTTTGTTT
GTTTNTCTCCNCCNCCTTTTTTCTCCCCCTTTTTTCCTTCTTTTTTTTTT
TTTTCTTCTTTTCCCTCTCCTCTTTTTTTCTCTCTTTTCCCTTTTTTCTT
CCCTTTCTTTCTTCTTCCCCCCCCCTCTCCTTTTTCTTCTTCTTTCTCTC
CTTTCTCCCCCCCNCCCCCCCCTTTCCTTCTCCCCCTCCCATTCTCCTTT
TTTCCCCCTCTCTCTTCCCCCCTCCCTCTTCTTTTTTN
CCAACCCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGAAGTTGGTT
CATTCACTAACTGCATCAAATATTTTATTTCAGCAAATGTTTTAACTCAG
TTTTTTTTAATTAAATTTTTGGAGAATTTTGTTGATAAATACAATATTTT
TAATATTTCTACCTCTCTTTATGCTCCAAATTCTCATGAGTCCCCCTTCC
CCAATTCACGGTCTCTCAGATTTATATAAAGCCTGCTGGGTCAACCTGGT
GTTACTCATATGTATATGTATTTAAGCCTGAGCACTTAGGATTAGATCAC
CTGTCAGGGCACCCGTCAATGGAAAAAAAATTGTCAGTTGCTCTGCATCT
AGGATTAGGACATAATGAAATTGCCTATATCCATGTTGGCATGTAAACTA
AAGGTATCAGTGTTCTCTTGTTGTTTAAATTCTGAATAAATGAGATTCTA
CCTTCCTGGTGTACATGGCTGATACTATCTCACAGTAGACTCTTGTTATA
ACCTTTCATTATTCTCTTCTCTTCTGTTTCTTGAGACCTTGGCGTAATGC
TTGTTTTTTTGAAAATTCACGTTAAGTTGGGCTATCTCCCTCCTATGGGG
TTTTACTCACGTTGACCAATAGTGAATTCCTGTTATATTTTTTTGCAAAT
AAAAACTTGCCTTGATCAAGGTTGAAAACCTTCCATTTTTTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k08.g1 MSMg01no466_k08.g1 CHROMAT_FILE:
MSMg01no466_k08.g1 PHD_FILE: MSMg01no466_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:12 2005
         (491 letters)



>mm_chr14_97551307_97552197
          Length = 891

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtgaagttggttcattcactaactgcatcaaatattttatttcagcaaatgttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtgaagttggttcattcactaactgcatcaaatattttatttcagcaaatgttttaa 260

                                                                       
Query: 61  ctcagttttttttaattaaatttttggagaattttgttgataaatacaatatttttaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagttttttttaattaaatttttggagaattttgttgataaatacaatatttttaata 320

                                                                       
Query: 121 tttctacctctctttatgctccaaattctcatgagtcccccttccccaattcacggtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctacctctctttatgctccaaattctcatgagtcccccttccccaattcacggtctc 380

                                                                       
Query: 181 tcagatttatataaagcctgctgggtcaacctggtgttactcatatgtatatgtatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatttatataaagcctgctgggtcaacctggtgttactcatatgtatatgtatttaa 440

                                                                       
Query: 241 gcctgagcacttaggattagatcacctgtcagggcacccgtcaatggaaaaaaaattgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgagcacttaggattagatcacctgtcagggcacccgtcaatggaaaaaaaattgtc 500

                                                                       
Query: 301 agttgctctgcatctaggattaggacataatgaaattgcctatatccatgttggcatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgctctgcatctaggattaggacataatgaaattgcctatatccatgttggcatgta 560

                                                                       
Query: 361 aactaaaggtatcagtgttctcttgttgtttaaattctgaataaatgagattctaccttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactaaaggtatcagtgttctcttgttgtttaaattctgaataaatgagattctaccttc 620

                                                                       
Query: 421 ctggtgtacatggctgatactatctcacagtagactcttgttataacctttcattattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggtgtacatggctgatactatctcacagtagactcttgttataacctttcattattct 680

                      
Query: 481 cttctcttctg 491
           |||||||||||
Sbjct: 681 cttctcttctg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)