BAC Information

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BAC

Clone NameMSMg01-468A15
Chromosome14 (Build37)
Map Location 25,148,984 - 25,149,385
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik
Downstream geneLOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468A15.T7 (MSMg01no468_a15.b1)MSMg01-468A15.TJ (MSMg01no468_a15.g1)
ACCAG551604AG551605
length8121,740
length of high quality
(start - end)
409 (47 - 455)---
definitionCHROMAT_FILE: MSMg01no468_a15.b1 PHD_FILE: MSMg01no468_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:05 2005CHROMAT_FILE: MSMg01no468_a15.g1 PHD_FILE: MSMg01no468_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCCAAGTTGTGTTCCCCTACCTGCAGTGAGCCAGGTCTAAGCCCACG
TAGGCCAGGACACAGTGCTGCTTGCTTATCCACTCCTCAGTTATGCAGGA
TGTTTTCCCAGATGTACTCATGTACATCATGAACCAGTACATTCATGATG
TACTGTTACCTCATTACCGTCACTGGTCACCTCTTACTGAGAGCAGCAGT
TGTGTTTCTACACTGAGTCTGATAATAAATCTGGCCATGGGGTAGTATAC
TGCCGCAGACCCTCTGGGCCCCTTTGTCTGCGTGGAACGGGTCTCTAGTC
TCGGGTGGACAAAGCGTCGGATTAATTGACAGACAGATGCACACAGGAGA
GGTTGTGTTGGATCTGAATGCAATTTGTCAAATTTAGCATCAGACTTTTT
ATGCAGAAGACAATAAGGAAGTTGGTTGACACACCAGCAAGGTACAAAGA
GGTTACTGTATTCTTACTTAATTCATGAGTAATTGCTCTTCCTCAATGTC
TAATTGTAATTCTCCTGGTAATAAATACTCTTTATATACCTGGCATTTAA
TAAAGTCTCCTCTTAATATATACCTTATTTTCTTTACTTCTTGTTTCATT
CTTCTCCTTCTTCCTGTTTAATCTTCTTTTTTCTATTTTATCTTTTGTTG
CCTTTTTTTTCCTATTTTTTTCTTCAATCTCACTTTGCCTTCTTTTACCA
CACATTTATATTTCCCACTTTTTTTTCAATTTTTCCATTTTTTTTTCCCA
TTCTCATACACT
ACAATAAGTACATCGTGCAGAGANTAGTTGTAGTTGCGGACGAGAGACTC
GCGCGCGTCTGCTCACCCAACGCATACGGGAGACATATCATCACTACCAA
NAAGAGAAATTATGTTCTCTGATATAAAATAGTAGATCAGTATAGATACA
ACATACTACTNATACATGATGTACCTCAAAACCCAGCAGGCGGCGAACAA
ACAGCAATGTATTNAAGATCGGTGCTGTGTCGTCGTCGTGTTTCGATATG
CTACTGAGGTTCGCTAATGCAGATATACGTAGTGCCGTATCTAGATGCTG
AGACGTACGTCAACNTCTCCACCTCTGTCTCAGTGATCATCTCTCTTGCA
TCAGTTCTATCGTCCTCGCTCTTGTCATCACAGACAGGGTGNGTATGATC
TACACTGATAAGAGCAGGAGTAAGACACAAAAGAACAGACGAGCGTCAGA
GCTACATCTTCACAATGTCGCAGANAGGAGGAAGTACCATCATAACCAAT
GATAGCTACAACGGACGAAGGCATGACTATCACATCTACGACTATTATCT
ATGACACTCACACCTCTCACGCACACACATATAGGCTGATAGATATACTA
ACATACTACACAATCGTCAGTGTGTACGTATATATGTCTCAACGCATCGA
CTCTTCCTTACGCACTCTGCTCTCGCTCGAAATACGCATACGCTCGACGA
ACAGTAGACTGTATCACACTCAACATCAACTGTACGTCACATACACACGA
TACCAGATCACTTCACTCATATGAGGATCTAATACGCTCTGCGCGTTCCG
TCGCGTTCTCGCANGCACTTGTACTCAATCTTCACATATACCTTGCGTAA
TCCGCCGTGTCGANCTACTCGTCACGCACGATCATATCACCTNCCTATAT
ATACACTAGATGCAAATCCTGATCATACAGCTTGCGTAGNTCATGCTACT
ATGACCCTCCACACGCAGCGTCTATACCACTATGTACTTGATCTTGTACA
TCGCGTGATGCANGTACTCTTAACTCACACATCGCGATGTCGACACGCGT
CGTACACTATCTGTAGCACTCTCGACAATCGTCGGCTAACCGATTAAGAA
TCACGTAGCGTCTCTCATCGTACTATCTATCTACGGCTGTCTGCGCTATA
ACGCATATCGAGGCTAGTGTTAGCANGTGTCATATTGCGCGACGCGTCGA
TCGCACGTACTACTACTACTCACTACACACGCCGACATATGCCTCACTTC
GTAGCAGNATTGTATACGACGCTGCTCATGCTCAGACTGTATCACTGCGC
GCGCGACATTAATTACGACACATAATCATACACATGACACGTACACATGA
TCATCATCTAACATTAATTACACGTACGAATATGGAACGCGCGCGTGTTG
ACACGACCTATTCGTATATCGTACATATTAACGAGCATGCGTCTAGCGAG
CAGCGCAGTGACGNAGTCGCTNCCATGNGACTCTCATCTNGCATGACNTA
GACNTGCGACTATCACATGACGCCGTCACGCACGATACTGCGTACAGCGA
GCTATCTGTCNTCATTACTCGCGTCTACTAGACTGCTCCTTTACCGATCA
CGCGCAGCNCGTGTCGCGCACTCCGTACTTATTAGCTAGCTGAGTNACTA
TGCTACTGTCGTCGTANTGTGGCCGTGTACGTGTGCGCAGATGCANTCGC
GCNTACTGCATTGACAACGATACATATCTGNCTATCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_a15.b1 MSMg01no468_a15.b1 CHROMAT_FILE:
MSMg01no468_a15.b1 PHD_FILE: MSMg01no468_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:05 2005
         (409 letters)



>mm_chr14_25148781_25149585
          Length = 805

 Score =  681 bits (352), Expect = 0.0
 Identities = 392/408 (96%), Gaps = 8/408 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccaagttgtgttc-c-cctacctgcagtgagccaggtctaagcccacgtaggcca 61
           |||||||||||||||  | | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 gaattccaagttgtg--cacacctacctgcagtgagccaggtctaagcccaagtaggcca 261

                                                                       
Query: 62  ggacacagtgctgcttgcttatccactcctcagttatgcaggatgttttcccagatgtac 121
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggacacagtgctgctt----atccactcctcagttatgcaggatgttttcccagatgtac 317

                                                                       
Query: 122 tcatgtacatcatgaaccagtacattcatgatgtactgttacctcattaccgtcactggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcatgtacatcatgaaccagtacattcatgatgtactgttacctcattaccgtcactggt 377

                                                                       
Query: 182 cacctcttactgagagcagcagttgtgtttctacactgagtctgataataaatctggcca 241
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 cacctcttactgagagcagtagttgtgtttctacactaagtctgataataaatctggcca 437

                                                                       
Query: 242 tggggtagtatactgccgcagaccctctgggcccctttgtctgcgtggaacgggtctcta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggggtagtatactgccgcagaccctctgggcccctttgtctgcgtggaacgggtctcta 497

                                                                       
Query: 302 gtctcgggtggacaaagcgtcggattaattgacagacagatgcacacaggagaggttgtg 361
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 gtctcgggtggacaaagcgtcggatgaattgacagacagatgcacacaggagaggttgtg 557

                                                           
Query: 362 ttggatctgaatgcaatttgtcaaatttagcatcagactttttatgca 409
           ||||||||||||| ||||||||||||  ||||||||||| ||||||||
Sbjct: 558 ttggatctgaatgtaatttgtcaaatcgagcatcagactctttatgca 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 805
Length adjustment: 9
Effective length of query: 400
Effective length of database: 796
Effective search space:   318400
Effective search space used:   318400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)