BAC Information

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BAC

Clone NameMSMg01-468F14
Chromosome14 (Build37)
Map Location 33,693,056 - 33,693,556
singlet/doubletsinglet
Overlap geneE130203B14Rik
Upstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik
Downstream geneEG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468F14.T7 (MSMg01no468_f14.b1)MSMg01-468F14.TJ (MSMg01no468_f14.g1)
ACCAG551842AG551843
length1,612797
length of high quality
(start - end)
---501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no468_f14.b1 PHD_FILE: MSMg01no468_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:32 2005CHROMAT_FILE: MSMg01no468_f14.g1 PHD_FILE: MSMg01no468_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATAATAAANNCCTGGGTATCTCGTNTTTCTTTTGCTTACTCACACTNC
AGATTCTTCCTCCTCTCCACCGAAGAGTACGCTCCGCAGCGACGTCACTC
GTACTCATCTCTCCTCANCACATCGATAGCGTCGAGCTAGCCCGCGGCCC
GCGATACGCAGCAGCATACCACGCGTGAGAGTGAGAGTGTGTGTGTAGTG
GATACGCGAGCTGCGCCGTCGCGTGACCACGTCGGCGCGCACCGAGCTCG
GGCTGCAGAGGTGTCAGCGGGGCGGCTGGAGAGGCGCGTACCTGTACCCG
ACGGTGCGTCGACACACTGTGAGTGTGTGTATACGTCACGTGGAGATGAA
GCGCGAGCGCAGCCCCGCTACCCATCACTACATACTAAAGGAGGATAGAA
GAGCAAAGGATAAACAGTGCTAATGACACACGCTGTGACGTACTGTTGCC
AGTGTCAGCTTTCAGACGCATTATCCTGCGCCGACGTCGCACACGCAGCT
ACCTNCTGCGCGCAGGTCTCACCCGTCTCATGTCCCGCACCTCACGCTAT
TGCCCGACACGACTCGTTACCTTGTCAGTCCCGACGTGCATCGAACGTGT
CTGCGCCGTATTCACCACCTTCACCTCGCATCTCACGCGCGCTCTATCAC
CCTTCTCGACGCCGCCTACGCNCATACCGACGCACACCGAACCAGAACGC
GATCGCTGACTCCGGCGCCTTGTTATATCGCTCACTCGGACATACGTTCC
AACCGCCCGACGCTATGCATCTACACGCAGACAAACATACCGTTCCCCGA
GCCGCCGCGTACTGCACCGCTCTCTCGATATCACCCACAGCACTACATAA
ATCTAACCCACTACAATCACGACCACGCGTCTACATCACACTCGGAACTA
CTGTTCNTGTCTCTCACGTTCGCGCAGCAGCTACTCCGTACGATCATAAC
GCCGACGATACGTTCGTGAGTGCCAATAGAGAACGCGCGACGGACCAGGC
TCGGCGTACNTACGTCGTCTACACCGTCGTACGCAGTGTACTTTCGATAC
GANCNGACGTAGACACCTCGAGACGCGCGCGNACCAACGCAGCGGCATAA
ATACACGACCATACGAACTCATCATTATCATCATCACACTCGACACNGAT
ATAACTGCTAGCTCGAGGCTTACGCGACATGTACACGTAACTCATACGCA
GCGCGCGCGCACGATAGGATGTGCGTATGATCGTAAATATGAATACGTAG
TCACGCACTACGCGAGCAGATATACGCTAACATGCCTGAGCGCGCTACTC
AGATCACACTGACGACGNTCTCGCGATCGTCGACAGACGATGCGGCANGA
TGCGCCAGTCGCTGCGCGATCATGATGGGCACAGACAGGGTACACATAAG
CGCGATCGCGGACATCTCGTACTAGCGCGCATATGGGATGCATCTGGCAT
ATTCGTATACTCGCCTTCATACTCGCGTGCGTACTCTACNACCAGNGTAC
TGAACCTCGCACGTCGATCGTGATCACTATCGAGACGATCCTACNCACCG
TAGTCTGCGACCTCGAACCACGATCATCTCATACGATACTGCCGCTCACG
TCCATCTCGCCN
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTATTGGGGAAGTTTCAAAGACATA
TGTAGGTCACATCCAAGGATCAAGAGCATGACAAAGGTTGACCCACCTCA
GCCTCTCTGTCTCTGCTGCTTGGCCAACTTGGCTAAAGCATTCTGTGCAG
GGCATGTTGATCTCAGCTGAAGCTACCTAGTGCCCAGTAGGCAAAGCTGG
GAACCATTTAACAAGCAGGACAAACAACTAACTAGTCCTTGTCAAATGAA
GGTTCTCTGGCAGTGCCCCTGAGTTTCTGGGGGAGAATTTGCCTGAGTAG
GGGACCTTCCTCTTAGAAGGGACAGAGGGTCCAGCTCCCAGGACCCAACA
TGGAGGAGCTCTTGAGATCTTGGGAGCCTTCTGCCTTGGCCTCCTGTCCA
GCCCAGGGCAGGATTTAGAACTCGAGAAAAATCTAGACAGTGCCTCCTTG
GTGCACACTAAGGAGAGCAGCGTAACAGTGCCCAGGAGTGAGCCTGTCAC
AACGGTGTGTCCCCAAGGATTCCAAAATTCGAGGAACACTTGTCATCAGA
GGGAATCTGCACAGAAAAATGTTAACTCCCGTTATAAAGGCAAAAGGTGT
CCCAAATTTAAAAGGATCCTTTTTGTCAAAAACTTCCCCCCACTCTGAAA
CCCCAGTCATTTCTCGGAAGGTGGGCGGAATCCCCTTTTTCTGGGGCCCT
GAACCAAATAAAAATAGCCCTGTGGTGTTCTTCTACCTATAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_f14.g1 MSMg01no468_f14.g1 CHROMAT_FILE:
MSMg01no468_f14.g1 PHD_FILE: MSMg01no468_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:32 2005
         (501 letters)



>mm_chr14_33692856_33693756
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 494/501 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactattggggaagtttcaaagacatatgtaggtcacatccaaggatcaagagcatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aactattggggaagtttcaaagacatatgtaggtcacatccaaggatcaagagcatgaca 642

                                                                       
Query: 61  aaggttgacccacctcagcctctctgtctctgctgcttggccaacttggctaaagcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaggttgacccacctcagcctctctgtctctgctgcttggccaacttggctaaagcattc 582

                                                                       
Query: 121 tgtgcagggcatgttgatctcagctgaagctacctagtgcccagtaggcaaagctgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgtgcagggcatgttgatctcagctgaagctacctagtgcccagtaggcaaagctgggaa 522

                                                                       
Query: 181 ccatttaacaagcaggacaaacaactaactagtccttgtcaaatgaaggttctctggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccatttaacaagcaggacaaacaactaactagtccttgtcaaatgaaggttctctggcag 462

                                                                       
Query: 241 tgcccctgagtttctgggggagaatttgcctgagtaggggaccttcctcttagaagggac 300
           |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 461 tgcccctgagctcctgggggagaatttgcctgagtaggggaccttcctctcagaagggac 402

                                                                       
Query: 301 agagggtccagctcccaggacccaacatggaggagctcttgagatcttgggagccttctg 360
           ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct: 401 agagggtccagctcccaggaccccacgtggaggagctcttgagatcttgggagccttcgg 342

                                                                       
Query: 361 ccttggcctcctgtccagcccagggcaggatttagaactcgagaaaaatctagacagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccttggcctcctgtccagcccagggcaggatttagaactcgagaaaaatctagacagtgc 282

                                                                       
Query: 421 ctccttggtgcacactaaggagagcagcgtaacagtgcccaggagtgagcctgtcacaac 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 281 ctccttggtgcacactaaggagagcagtgtaacagtgcccaggagtgagcctgtcacaac 222

                                
Query: 481 ggtgtgtccccaaggattcca 501
           |||||||||||||||||||||
Sbjct: 221 ggtgtgtccccaaggattcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)