BAC Information

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BAC

Clone NameMSMg01-469B05
Chromosome14 (Build37)
Map Location 22,093,701 - 22,094,199
singlet/doubletsinglet
Overlap geneAdk
Upstream geneNudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469B05.T7 (MSMg01no469_b05.b1)MSMg01-469B05.TJ (MSMg01no469_b05.g1)
ACCAG552398AG552399
length1,718769
length of high quality
(start - end)
---499 (80 - 578)
definitionCHROMAT_FILE: MSMg01no469_b05.b1 PHD_FILE: MSMg01no469_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:31 2005CHROMAT_FILE: MSMg01no469_b05.g1 PHD_FILE: MSMg01no469_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCCTTCTTTTTCGTTATATTGTCGTTAATTATACTTACAGTCCGCGT
ATTNTCTATATCCGCNCGGCGGATGCGTGTGCTGGTCGGCCGCGCTTATG
CGTTCTCGTTGCTTCTTGTATATGTGCGCGCGTTTAGCGTGTCAAATGGA
GAGCGGCTGTACGGTTTAGTGTCGGCTACAATGATACGCACAGTGGACAT
GCATGTGCTCATCGCGAGCTCCACGCGACATGATATGAGTGTATATCAGT
AACCATATGACACTGACGCAAGTATATTGCGGCGTAAAATTCTGCGCCGA
GGTCTGTTGCGCGTTATGTTGATGTTTTGAACTCCGATATCGGTACGTGC
AAGCGACGACTCTCTTAAGTGTGATAGAGGAGAGAAAGAACAATTGGTGA
GTGATACACGTTGTCTCTGCGTGTTTTGATCTATGTCACACGAAGCGCAC
ACGATATTTCGTATTGTCTGCGCCTATTCGCGTAGTTTGTCGCGCGTAAG
AGCGCGATAATTCCACGTAAAGTGTGAGTGAACTGGTACGCGCGCTAGCG
AGCTTATATTTTACCGGATTTGCCTGCGCACTCATTACTGGCTCACACCG
CACGATATTATATGATTGTGTATTGGCGTTATTGTTGTGAGGGCGAGGAG
AGAGGTGAACGATAAAACACTAATACATACACGAGACCAGTACAAAGATG
AAGACACGGGCAGAGGTGGCTATATAGGTGGTCGAGGTTAGGTGNCGCTC
GGGGGTGAGTGGATATAGCAGTATACAGCGTCCGCATGCTAGGTGCGTGT
GAGGGCGGGAGTGATGAGATGGNGTAGATATGAGGCAATTCCACCGCGGT
CGAGCGATATAATATGACGAGGCGCGGAATATGTCCGTGTGAGGTGACGT
ATATTGTGTCCCGTGAGTGATNCTACACGCAGCGTGCGGTTCGATACGGG
AGGTGCGGTTGTGTTACGTGGATGCAGCTCGTAGATGGCTCGCTATAATG
GTATCACGTGATGTAACGTGTATGATCGAAGCGTGGCGTACGCTGTGTTG
TGTGTGCGTATATATACGTATGCACTGTGGTATGATAGCGCGGCGTGTGT
GTATGATATGGGTTTTAGAGTGCGACGCAGTCAGACACGTGTATGATGCG
TGTCTGTGTGTACACGCGTGTACNTATACGTACTGCGCTNACACGCTGCG
TATGTCGTGATATCATGCGTCTCACGACTGCGGCTGTGTGAAGACGACGA
NTAGTGTATCGACCGCAGTGCAGANTACANCTGGAGTGCGGGAGNAACAG
ACGGACGCGTATGGACGATGTAGCTTGTGCAGATAATGACGCGTATATGC
CGAACATCGACANACATCACGTAAAGCAGTGTAGACGAGAGTTGCGATGA
GGATTGATTGCGTAGCATTNCTACGACGCGCGTNATATATCGGCGCGCGA
TATACATATGATGTGTGACGGCGCGTGCGCGTAAGTGTCGACGTATTTTT
GNTAGCTATCTACTCGTACACTGAGCGCAGCGAGTGACGTGTCACAGCAC
GCACNTATACAGCGACAGCGCGATAGAGTGCGTGCGTCGCTGGTGATACG
GTGGGAAGGTATGATGTGGTGTGTGTATATCCGCCAACGGCATATTGATA
TGCGTGGTACACGGATGNTGCGGNTAGNATCTCATCGACAACACGCACAT
GCTGCGCGCGTGCGATAA
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGGTTGGGAGCCATAAA
AAACCTTTTAAGAAGTAGAGGAATATAAGGCTGTGTTTGAGAGTTCTTAT
TCCCTTATGCTAATGAATTCAGCTCCATATTGAAGGATAATTAGTACACA
AATATCTCCAGCTAGTCTTTAGTTTCTTACTACATTTAGTTTGGAAATAT
ATTGAAAGACATGTAAATTAGTGACTTCCTCATTGCTATTTATTCTGCAA
TTCAGTTTTTCTTGGTGTCTTTATTTTGTTTTTATTTATTGTTTATTTTA
GTTATATACTTCTGAGGCAGAAAGACTGGCCTCAACCTTGCTACCATTTG
CCACAGCCTCCCAAGGAACTAAAACTGCTAGGCAGATGTAGTTAGTATTT
ATAGCATCATGTGTTCCTTATTGGTTTTCACAGAAGCAGCTTTCGAGTTC
TCCCTTCCCACCCAGCCCACCCCAACCCTGTGCCAAACAACAACTCAGAT
TTGCTCTCACTTTACACTTTGCTAATAATTCCTGCCAAAGTCTGGGTTGT
AGTTTGGTATTAAAGCACATAAATTTTTGGGTATGAGTTACGTTGCTTGC
ACCCCAAATAACCAGGATTTTCTTAAAGCACATATTACCGAATTGGGGGC
TCCACCGGCAACCGGGGGTTATTTTTTTTCAAATCCTGAGGTCACCCCCC
CGCTTTCGGCCTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_b05.g1 MSMg01no469_b05.g1 CHROMAT_FILE:
MSMg01no469_b05.g1 PHD_FILE: MSMg01no469_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:31 2005
         (499 letters)



>mm_chr14_22093501_22094399
          Length = 899

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatggttgggagccataaaaaaccttttaagaagtagaggaatataaggctgtgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatggttgggagccataaaaaaccttttaagaagtagaggaatataaggctgtgtttg 260

                                                                       
Query: 61  agagttcttattcccttatgctaatgaattcagctccatattgaaggataattagtacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagttcttattcccttatgctaatgaattcagctccatattgaaggataattagtacac 320

                                                                       
Query: 121 aaatatctccagctagtctttagtttcttactacatttagtttggaaatatattgaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatctccagctagtctttagtttcttactacatttagtttggaaatatattgaaaga 380

                                                                       
Query: 181 catgtaaattagtgacttcctcattgctatttattctgcaattcagtttttcttggtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtaaattagtgacttcctcattgctatttattctgcaattcagtttttcttggtgtc 440

                                                                       
Query: 241 tttattttgtttttatttattgtttattttagttatatacttctgaggcagaaagactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattttgtttttatttattgtttattttagttatatacttctgaggcagaaagactgg 500

                                                                       
Query: 301 cctcaaccttgctaccatttgccacagcctcccaaggaactaaaactgctaggcagatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcaaccttgctaccatttgccacagcctcccaaggaactaaaactgctaggcagatgt 560

                                                                       
Query: 361 agttagtatttatagcatcatgtgttccttattggttttcacagaagcagctttcgagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttagtatttatagcatcatgtgttccttattggttttcacagaagcagctttcgagtt 620

                                                                       
Query: 421 ctcccttcccacccagcccaccccaaccctgtgccaaacaacaactcagatttgctctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcccttcccacccagcccaccccaaccctgtgccaaacaacaactcagatttgctctca 680

                              
Query: 481 ctttacactttgctaataa 499
           |||||||||||||||||||
Sbjct: 681 ctttacactttgctaataa 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)