Query= MSMg01no471_e08.b1 MSMg01no471_e08.b1 CHROMAT_FILE:
MSMg01no471_e08.b1 PHD_FILE: MSMg01no471_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:28 2005
(581 letters)
>mm_chr14_20527644_20528623
Length = 980
Score = 1033 bits (534), Expect = 0.0
Identities = 567/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctaacttacaactgagttctgacccatcttctttggagccgacctctgtcata 63
||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattcttaacttaaaactgagttctgacccatcttcttaggagccgacctctgtcata 263
Query: 64 gcagcctttcaaacatgatgtagaagggatattcatattactgggcccgtagacatgaga 123
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 264 gcagcctttcaaacatgatgtagaagcgatattcatcttactgggcccgtagacatgaga 323
Query: 124 aggtatgtctccagttctgaaaatgagcagagcttatgttgtatcttacaaatacaaggg 183
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 324 aggtatgtctccagttctgaaaatgagcagaacttatgttgtatcttacaaacacaaggg 383
Query: 184 gcagagaccagatttcatgactattactagaaatctcagacaatggatgaatagcctaaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 gcagagaccagatttcatgactattactagaaatctcagacaatggatgaatcgcctaaa 443
Query: 244 gcatcacttgagtcagaaagccaagtatctaaaagtcaagtagctaaacccttagcattt 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 gcatcacttgagtcagaaagccaagtatctaaaagccaagtagctaaacccttagcattt 503
Query: 304 atctcagaatactcagggcaacctaagtgggctgcaagagcccccaggtcttggcctgtg 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctcagaatactcggggcaacctaagtgggctgcaagagcccccaggtcttggcctgtg 563
Query: 364 tggggggcaatggtccagctccggctccagccaaaaacaatctaatgagcaccttttgtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggggggcaatggtccagctccggctccagccaaaaacaatctaatgagcaccttttgtt 623
Query: 424 ctctgggggctgggggtggggggtggggggacaaagctccggccacagagaagattcaag 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctctgggggctgggggtggggg-tggggggacaaagctccggccacagagaagattcaag 682
Query: 484 ggagaaaaatgaatcaccagctaccaggaaacaccaggagctctctaaatagagtgaaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggagaaaaatgaatcaccagctaccaggaaacaccaggagctctctaaatagagtgaaat 742
Query: 544 cctgtacaggggtgaggcaaatgttttaggagctgcaa 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctgtacaggggtgaggcaaatgttttaggagctgcaa 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_e08.g1 MSMg01no471_e08.g1 CHROMAT_FILE:
MSMg01no471_e08.g1 PHD_FILE: MSMg01no471_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:28 2005
(570 letters)
>mm_chr14_20691280_20692249
Length = 970
Score = 978 bits (506), Expect = 0.0
Identities = 541/570 (94%), Gaps = 27/570 (4%)
Strand = Plus / Minus
Query: 1 agagatccccctgtctctgactcgagaataaaggcatgagccaccacacccagcttagaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agagattcccctgtctctgactcgagaataaaggcatgagccaccacacccagcttagaa 593
Query: 61 atgttaaagcaggaaaacctgaatgtgatgtgcgcatctttaccccacatgaacggtgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atgttaaagcaggaaaacctgaatgtgatgtgcgcatctttaccccacatgaacggtgta 533
Query: 121 tttgttttaataaatggaattttcagattcatttcctacggggtcactttcattgcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tttgttttaataaatggaattttcagattcatttcctacggggtcactttcattgcaaag 473
Query: 181 acctgtggaccacctcccacatgagtattgatttaagagggacctggaaatataaaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acctgtggaccacctcccacatgagtattgatttaagagggacctggaaatataaaatgt 413
Query: 241 cggggaaacagagaaaattattttctttaggagtctgttcatagcagatttatctggtgc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgggaaaacagagaaaattattttctttaggagtctgttcatagcagatttatctggtgc 353
Query: 301 tgtgtaggagtcctctcccttcgtcactgtgcctcatgtacagcccttgggaatggagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgtgtaggagtcctctcccttcgtcactgtgcctcatgtacagcccttgggaatggagaa 293
Query: 361 atactggagggagggtcttcagagtcctgcaggctaggagagagagagagagagagagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atactggagggagggtcttcagagtcctgcaggctaggagagagagagagagagagagag 233
Query: 421 agagagagagagagagagagagagagnatgtaaggagattttaacttgctgtagctgcac 480
|||||||||||||||||||||||||||||||||
Sbjct: 232 ---------------------------atgtaaggagattttaacttgctgtagctgcac 200
Query: 481 aataatgccaccccacccccaccccactcagagtgtgttattctctgtctgtgattttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aataatgccaccccacccccaccccactcagagtgtgttattctctgtctgtgattttac 140
Query: 541 aactatactagagaagacagagccctcaga 570
||||||||||||||||||||||||||||||
Sbjct: 139 aactatactagagaagacagagccctcaga 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
