BAC Information

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BAC

Clone NameMSMg01-471G21
Chromosome14 (Build37)
Map Location 81,795,021 - 81,795,586
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828, LOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G21.T7 (MSMg01no471_g21.b1)MSMg01-471G21.TJ (MSMg01no471_g21.g1)
ACCAG554199AG554200
length771769
length of high quality
(start - end)
601 (48 - 648)566 (78 - 643)
definitionCHROMAT_FILE: MSMg01no471_g21.b1 PHD_FILE: MSMg01no471_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:40 2005CHROMAT_FILE: MSMg01no471_g21.g1 PHD_FILE: MSMg01no471_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAAATTCCTAGGCAAATGTATAGAACTAGAAAATAACATAC
TGAGTGAGGTAACCGAATCGCAAAAGTAAACAAATGGTATGTACTCAATA
ATCAGTGGACACTAGCACCAAAGCTCAAAATAACCAGGATACAATTCATA
GACCACATGAAGCTCAATAAGAAGGAAGACCACGTTGTGAATACTTCGGT
CTTTCTTAGAAGGACAACAAAATACTTACAGGAGCAAATATGGAGATAAA
ATGTAGATTACAGGCTGAAGGAAACGCTACCCAGACACTGTCCCATCTGG
GGACAGTCCCATATACAGTTACCAAACCCAGACACTATTGTGATTGCCAA
GAAGTGCATGCTGAAAGGAGCCTGATATAGCTGTCTCCTGAGAGGCCCTG
CCAGAGCCTTACAAATATAGAGGCTGATGTTCACAGCTGACCATTAGACT
GAGGCTGGGATGCCTAACAGAAGAGTTAGAGAATGGACTGAAGGAGTTGA
AGGGGTTTGCAACCCTATAGGAAGAACAACAATATCAACCAATCAGACCC
CTGAGAACTCCCAGGGACTAAGCCATCATCAAAAAAGTACGCATGGCACC
AGCTGCCTAGGTAGCAGAGGATGGCCTTTCCCTGCATCAATGGAAGGAGA
AGCCCTTGGTCCTATGAAAGCTCTATAGATACCCCCAGTATAGGACAATC
CAGGGCAGGGAGTTGGGAGTA
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCTCCCTCAGTTCACTAAG
GTTTGTACTTGGAGATGGCATCCTGTGGGAGAATGGGTTTTCTATATTTT
CTATCCAAAGAAGATGGTTTGTGGCAATGCATATAAATACTCCATATGCT
GGCATGGAGTCTTACTTTACAGTCAGAAGTATAAGACAGTAATTATCAAT
CAGAAAGTTACAAAAAGTTTACATTTATTCTGTAATATATAGCTGTAGAA
TTATTCTTCAGTTTTTGTTTTGGGATAATGTAACTCCAAGGAAAACCAAC
AGCAGTCATGGTTGTAACTGAGAGTATTGATGTGCTTAAAGTGGATAATT
TTGTATGTCACTGTGTAACTGTTATGGGTAAGTAGAGATGTCACCTACTG
GCTCATATTCTGGTAGTTGTATTATCCTCTATATTGGGTCATAACATAAT
CTATAACCACTTATCCATCTGCATCATTGTACTTTTTTGTAGCTTCAATA
AGAATATTTTGAAACTGCCATATTATTTGATGGCTATAATAAAATTTAAT
TTTTTTCCCTAAGGATCTTACTATGTGTCCCTGGATGTCCCTGGTTGAAC
TCACTATGTGGATCAAAGTGGCCTCAAACTCAGAGCTGAACCTTCCTCTG
CCAAGTACTGAGGGTTAATGTGTATACTTTCACACCCTGGCTTAATATGA
TTAAAAATGCCCATTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g21.g1 MSMg01no471_g21.g1 CHROMAT_FILE:
MSMg01no471_g21.g1 PHD_FILE: MSMg01no471_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:40 2005
         (566 letters)



>mm_chr14_81794880_81795845
          Length = 966

 Score = 1048 bits (542), Expect = 0.0
 Identities = 560/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccctccctcagttcactaaggtttgtacttggagatggcatcctgtgggagaatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 actccctccctcagttcactaaggtttgtacttggagatggcatcctgtgggagaatggg 648

                                                                       
Query: 61  ttttctatattttctatccaaagaagatggtttgtggcaatgcatataaatactccatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttttctatattttctatccaaagaagatggtttgtggcaatgcatataaatactccatat 588

                                                                       
Query: 121 gctggcatggagtcttactttacagtcagaagtataagacagtaattatcaatcagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gctggcatggagtcttactttacagtcagaagtataagacagtaattatcaatcagaaag 528

                                                                       
Query: 181 ttacaaaaagtttacatttattctgtaatatatagctgtagaattattcttcagtttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttacaaaaagtttacatttattctgtaatatatagctgtagaattattcttcagtttttg 468

                                                                       
Query: 241 ttttgggataatgtaactccaaggaaaaccaacagcagtcatggttgtaactgagagtat 300
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtttgggataatgtaattccaaggaaaaccaacagcagtcatggttgtaactgagagtat 408

                                                                       
Query: 301 tgatgtgcttaaagtggataattttgtatgtcactgtgtaactgttatgggtaagtagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgatgtgcttaaagtggataattttgtatgtcactgtgtaactgttatgggtaagtagag 348

                                                                       
Query: 361 atgtcacctactggctcatattctggtagttgtattatcctctatattgggtcataacat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 347 atgtcacctactggctcatattctggtagttgtattatcctctatattgggtcataacgt 288

                                                                       
Query: 421 aatctataaccacttatccatctgcatcattgtacttttttgtagcttcaataagaatat 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 287 aatctataaccacttatccatctgcatcattgtacttttttgaagcttcaataagaatat 228

                                                                       
Query: 481 tttgaaactgccatattatttgatggctataataaaatttaatttttttccctaaggatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 227 tttgaaactgccatattatttgatggctataataaaatttaattttttttcctaaggatc 168

                                     
Query: 541 ttactatgtgtccctggatgtccctg 566
           ||||||||||||| ||||||||||||
Sbjct: 167 ttactatgtgtccttggatgtccctg 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)