BAC Information

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BAC

Clone NameMSMg01-471H13
Chromosome14 (Build37)
Map Location 100,475,295 - 100,657,747
singlet/doubletdoublet
Overlap geneKlf12
Upstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471H13.T7 (MSMg01no471_h13.b1)MSMg01-471H13.TJ (MSMg01no471_h13.g1)
ACCAG554231AG554232
length753755
length of high quality
(start - end)
418 (325 - 742)665 (75 - 739)
definitionCHROMAT_FILE: MSMg01no471_h13.b1 PHD_FILE: MSMg01no471_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:43 2005CHROMAT_FILE: MSMg01no471_h13.g1 PHD_FILE: MSMg01no471_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,657,431 - 100,657,747)(100,475,295 - 100,475,959)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACGAGCGGCGG
AATTCCTCACATTTCGAAAAACAAGGAAGAAATTTCAATTCAGAGTCTTC
AATTTGATTCTTCCTTTATAACCATAACAAGCACAACAGTAAGAACTCAC
TCCATAAGCTTCAGGTCCCCCTTCTATCATTGATCTGAAGGATTGTCGTG
TCAACCTGTGCCCAATAATCCCTGCTTAAAAGTGAGTTTTTCACTGGAGG
TCATCTGTGCACCCTTCCATCTGCTTCCATTCATAGAAGTGGTTTGCCGT
TGTAATTTTTGGTTGTAAATTGTGAGGAGGAGACTTTGATAACATTGCGT
CCCTGCCTAGAATATTTACAGATGGGATACGGACACAAGGTTGGAAGAAC
TAGCTGTGACGAGGTGTGGCTGGTGTGTCTCAGCTTCCCACTTAACATGT
TGAAACTTATTTCTTTTTGTAGTGCCATTAAGATGTAGCTCATTTGGGTG
GTAATTACCATGAGAGCTTCAGGTTTGCTAGGAATTAATGTGATCCTAAA
AGAGGCTGAAGGGACTGCCCATGCCCTTGAACCTTCTTCTAAGAACCACA
TCTAAGAAGGTGTGCCAAGTTCCATATGAGGAATGTGTTCTCACCAGACA
CCAAGTCTGTTGGAAACTTGGACTTCCTAAACCTCAGACTGGGAGAAATA
GATTTTTGATATTTAAAGTTATCAAGTTCAATGGCTTTGATAGTAAATAG
CCC
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATACAATATATTTTGATCAAATTCA
TTCTCACTCCCCCAGCTCCTTTCAGATCTTCTCTATCTCCCTCCTTACCT
GACTTTATTATCTCCTTGTCCCTCTCTTCCCTAGACTTTGGGACATGCCC
TAGGCTATTTTAGAAATATCATGTGCCACTCCATTGAAGAAAGCTGGCTT
CCCCTCTCCCAGAAGCAATCAAGTGTCAATAGCTCCTTGGCCAAAGTGGG
ACTTCATGCTTGCTTCCCATCCTCCACTCTGGGATTTTGTCTGGCTTGAG
CTTGTACAGGTCTTTGTGCATACTGTCACAGTTTCAAGGGTGCATTTTTA
TCCACTAAATGCCTTGGGGAAATTTCTTTCTCACTATCTTAGTGCCCTTT
TCCCACCACTCTCAATGAATGATTGCTAAAACACTGTTCATATTGGGTTG
ACCATAGGAGACCTGTTTTCCTCTCTTATAATTGTGAACAGCACAAGTAT
TTTATTAAGCCATAGATTCCAGAGCTTGGAAGGAAGAAAGGGAACATGGC
CCCTTGTATGCTGTTCTTTATTTCTCTCCTTCTTAGGCAGGGGGTGAAGT
CGATGAGGTGTCACATAAAAACCAGGGAAGCAGGATTCGCTTAGTGAGAA
GCCACTGTCATTGAGACTCATGTGTTCCATTGTGGGGACTGTTCTAGAAC
TGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_h13.b1 MSMg01no471_h13.b1 CHROMAT_FILE:
MSMg01no471_h13.b1 PHD_FILE: MSMg01no471_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
         (418 letters)



>mm_chr14_100657431_100658248
          Length = 818

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggagactttgataacattgcgtccctgcctagaatatttacagatgggatacggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aggaggagactttgataacattgcgtccctgcctagaatatttacagatgggatacggac 258

                                                                       
Query: 61  acaaggttggaagaactagctgtgacgaggtgtggctggtgtgtctcagcttcccactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaaggttggaagaactagctgtgacgaggtgtggctggtgtgtctcagcttcccactta 198

                                                                       
Query: 121 acatgttgaaacttatttctttttgtagtgccattaagatgtagctcatttgggtggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 acatgttgaaacttatttctttttgtagtgccattaagatgtagctcatttgggtggtaa 138

                                                                       
Query: 181 ttaccatgagagcttcaggtttgctaggaattaatgtgatcctaaaagaggctgaaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttaccatgagagcttcaggtttgctaggaattaatgtgatcctaaaagaggctgaaggga 78

                                                                       
Query: 241 ctgcccatgcccttgaaccttcttctaagaaccacatctaagaaggtgtgccaagttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ctgcccatgcccttgaaccttcttctaagaaccacatctaagaaggtgtgccaagttcca 18

                            
Query: 301 tatgaggaatgtgttct 317
           |||||||||||||||||
Sbjct: 17  tatgaggaatgtgttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no471_h13.g1 MSMg01no471_h13.g1 CHROMAT_FILE:
MSMg01no471_h13.g1 PHD_FILE: MSMg01no471_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:44 2005
         (665 letters)



>mm_chr14_100475095_100476159
          Length = 1065

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaatatattttgatcaaattcattctcactcccccagctcctttcagatcttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaatatattttgatcaaattcattctcactcccccagctcctttcagatcttctct 260

                                                                       
Query: 61  atctccctccttacctgactttattatctccttgtccctctcttccctagactttgggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctccctccttacctgactttattatctccttgtccctctcttccctagactttgggac 320

                                                                       
Query: 121 atgccctaggctattttagaaatatcatgtgccactccattgaagaaagctggcttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccctaggctattttagaaatatcatgtgccactccattgaagaaagctggcttcccc 380

                                                                       
Query: 181 tctcccagaagcaatcaagtgtcaatagctccttggccaaagtgggacttcatgcttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcccagaagcaatcaagtgtcaatagctccttggccaaagtgggacttcatgcttgct 440

                                                                       
Query: 241 tcccatcctccactctgggattttgtctggcttgagcttgtacaggtctttgtgcatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccatcctccactctgggattttgtctggcttgagcttgtacaggtctttgtgcatact 500

                                                                       
Query: 301 gtcacagtttcaagggtgcatttttatccactaaatgccttggggaaatttctttctcac 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacagtttcaagggtgcatttttaaccactaaatgccttggggaaatttctttctcac 560

                                                                       
Query: 361 tatcttagtgcccttttcccaccactctcaatgaatgattgctaaaacactgttcatatt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tatcttagtgcccttttcccaccactctcaatgaatgatcgctaaaacactgttcatatt 620

                                                                       
Query: 421 gggttgaccataggagacctgttttcctctcttataattgtgaacagcacaagtatttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggttgaccataggagacctgttttcctctcttataattgtgaacagcacaagtatttta 680

                                                                       
Query: 481 ttaagccatagattccagagcttggaaggaagaaagggaacatggccccttgtatgctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaagccatagattccagagcttggaaggaagaaagggaacatggccccttgtatgctgt 740

                                                                       
Query: 541 tctttatttctctccttcttaggcagggggtgaagtcgatgaggtgtcacataaaaacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctttatttctctccttcttaggcagggggtgaagtcgatgaggtgtcacataaaaacca 800

                                                                       
Query: 601 gggaagcaggattcgcttagtgagaagccactgtcattgagactcatgtgttccattgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggaagcaggattcgcttagtgagaagccactgtcattgagactcatgtgttccattgtg 860

                
Query: 661 gggac 665
           |||||
Sbjct: 861 gggac 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)