BAC Information

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BAC

Clone NameMSMg01-471I21
Chromosome14 (Build37)
Map Location 81,014,138 - 81,014,721
singlet/doubletsinglet
Overlap genenone
Upstream geneSugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I21.T7 (MSMg01no471_i21.b1)MSMg01-471I21.TJ (MSMg01no471_i21.g1)
ACCAG554295AG554296
length749761
length of high quality
(start - end)
662 (73 - 734)582 (75 - 656)
definitionCHROMAT_FILE: MSMg01no471_i21.b1 PHD_FILE: MSMg01no471_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:50 2005CHROMAT_FILE: MSMg01no471_i21.g1 PHD_FILE: MSMg01no471_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATTCCTGATCTTTTCAAGACTTTTATCATGAATGGGTGTGGGATTTTG
TCAAATGTGTTCTCTGCATCTAAGGAGATGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAATGGATTACGTTGATGGATTTCTGTATATTAAACC
ATCCCTGCATCCCTTGAATGAAACTTACTTGTTCATGATGGATGATTATT
TTGATGTATTCTTGGATTCGGATTTTATTGAGTATTTTTGCATCGATATT
CATAAGGGAAATTGGTCTGATTTTTTCTTTCTTTGTTGGATCTTTGTGTG
GTTTAGGTATCAGAGTAATTGTGGCTTAATAGAATAAATTGGGTAGAGTA
CCTTCTGTTTCTATTTTGTGGAATAGTTTGAGTAGAGTTGGAATTAGGTC
ATCTTTGAAGGTCTGATAGAACTCTGCAATAAACCCATCTGGTCTGGGCT
TTTTTTGGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGAGA
TGGGACTGTAAAGATCATTAATCTGATCCTGATTTAACTTTGGTGCCTGG
TATCTGTCTAACAAGTTGTTCATTTCATCCAGGTTTTCTAGTTTTGTTGA
GTATAGCCTTTTGTAGTAGGATCTGATGATGTTTTGGATTTCCTCANGAT
CTGTTGTTATGTCTCCTTTTTCATTTCTGATTTTGTTAATTAGGATACT
CGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCACCACAGCAACAGCATTCTAATC
ACAGGCTGTAAAGAGTTCTAATTGAAACAAAACTAATGAAGAGTCAGGCC
AGCCTCCTCCAACATCAGAATCCCTGTGAACACTGGGCTTCCGTGAGTCA
TTTTCCTCCCTGAATAACTCAGCACAAACAGTGACTTCCAAACTAATGGC
AACATCACCGTCATCCAGATTTCTTTTTTATGCCTTGCATCGTGTTCCAG
GGTAGAACACACAGAGCTGGCTCATCTTCTGCCATCAACTAATGCTGCTA
AATGTCAGGCATTTAATAAAGTTAAAGGGCAAAAAAGTTTTAAACAATTT
ATTCTGCCGAGCAATCAGTCTTTGAGAAGGCTCAGGAAAACTCATTGCTT
TATTGACTGGATCAGAGGGGAAATGTTTCTTATCAGGTTTTAAAATGGCT
TTAGAGATCACTTGTATATATGCATTTTGCATTTATTTGTACATAGCATG
TATCGAGGAATATTCATTAAATGTAATAGTATGCATACTCTTGTCCATAT
CAACTGTGAACTTTTTTTAATAACAAATTGTGTTGTAAGCCCATGTGTTT
GCAAGCCAGGGTACAGTTCCTATAAAAAACTGTTGGTATGTTACCATTAC
TCACATAACAAATATTCTTTACATCAGCCAGTGGAGTAAGGAAGAGCCAA
GACGTGCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i21.g1 MSMg01no471_i21.g1 CHROMAT_FILE:
MSMg01no471_i21.g1 PHD_FILE: MSMg01no471_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:50 2005
         (582 letters)



>mm_chr14_81013938_81014921
          Length = 984

 Score = 1094 bits (566), Expect = 0.0
 Identities = 579/584 (99%), Gaps = 2/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccacagcaacagcattctaatcacaggctgtaaagagttctaattgaaacaaaact 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 784 ctcaccacagcaacagcattctaatcgcaggctgtaaagagttctaattgaaacaaaact 725

                                                                       
Query: 61  aatgaagagtcaggccagcctcctccaacatcagaatccctgtgaacactgggcttccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aatgaagagtcaggccagcctcctccaacatcagaatccctgtgaacactgggcttccgt 665

                                                                       
Query: 121 gagtcattttcctccctgaataactcagcacaaacagtgacttccaaactaatggcaaca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 664 gagtcattttcctccctgaataactcaggacaaacagtgacttccaaactaatggcaaca 605

                                                                       
Query: 181 tcaccgtcatccagatttcttttttatgccttgcatcgtgttccagggtagaacacacag 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 604 tcaccgtcatccagatttcttttttatgccttgcatcatgttccagggtagaacacacag 545

                                                                       
Query: 241 agctggctcatcttctgccatcaactaatgctgctaaatgtcaggcatttaataaagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agctggctcatcttctgccatcaactaatgctgctaaatgtcaggcatttaataaagtta 485

                                                                       
Query: 301 aagggcaaaaaagttttaaacaatttattctgccgagcaatcagtctttgagaaggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagggcaaaaaagttttaaacaatttattctgccgagcaatcagtctttgagaaggctca 425

                                                                       
Query: 361 ggaaaactcattgctttattgactggatcagaggggaaatgtttcttatcaggttttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggaaaactcattgctttattgactggatcagaggggaaatgtttcttatcaggttttaaa 365

                                                                       
Query: 421 atggctttagagatcacttgtatatatgcattttgcatttatttgtacatagcatgtatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atggctttagagatcacttgtatatatgcattttgcatttatttgtacatagcatgtatc 305

                                                                       
Query: 481 gaggaatattcattaaatgtaatagtatgcatactcttgtccatatcaactgtgaac--t 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 304 gaggaatattcattaaatgtaatagtatgcatactcttgtccatatcaactgtgaacttt 245

                                                       
Query: 539 ttttttaataacaaattgtgttgtaagcccatgtgtttgcaagc 582
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttttttaataacaaattgtgttgtaagcccatgtgtttgcaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space:   557128
Effective search space used:   557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)