BAC Information

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BAC

Clone NameMSMg01-472E01
Chromosome14 (Build37)
Map Location 79,388,803 - 79,578,766
singlet/doubletdoublet
Overlap gene1300010F03Rik, LOC100043765
Upstream geneEpsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream geneAU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472E01.T7 (MSMg01no472_e01.b1)MSMg01-472E01.TJ (MSMg01no472_e01.g1)
ACCAG554830AG554831
length752778
length of high quality
(start - end)
476 (48 - 523)401 (77 - 477)
definitionCHROMAT_FILE: MSMg01no472_e01.b1 PHD_FILE: MSMg01no472_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:49 2005CHROMAT_FILE: MSMg01no472_e01.g1 PHD_FILE: MSMg01no472_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,578,337 - 79,578,766)(79,388,803 - 79,389,203)
sequence
CCCTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGCCTTTACTATACACGTGGGCCAACTGCCCACCAGAATTAA
AATATCCATGTTGGTGAGCTACAGGTTTCTTTTTTTTTCTCCCCCATTAC
AGGTTTCTTTATTTCATATTTACATCAATATATAATATTCATTTATAATT
TTGATAAAGGAATGATACTCCAAATATATAAAATTCTCTTAAAACCCATG
TTCTAAAAAGTTAAAAATGGGCAAAAACCTATGGGAAAACCTGTTACACT
AAATGGGCATATTGTCAAATTACATTCTTACTATTTATGTTTACAGTCAT
AGATCAGTGCTGCCCTCAGCCTTGCTCAGAGAGCTTCTTATTGTGGTGGC
AGTGAATGCTGAGGCACCACTGAATGCACACTCTCTGGGGGGCATCGACA
TCTCCATGTTTAAGGCTCAGGAAACAAAGCACAGGAGGGAGAGCTGAAAG
AAGGGTGAAGGGTGTGATGGTTGTTATGAAACGATCCGCTCTCTGTCTGT
TTTTAACACCAGCCCCTACCCTTTTTCTGCCATTCTTTTCCCTTTATGAA
TTATTTACCCCACCTCTCCTCGTCGTTTACCCCCACCCCCTTTTCTCCTT
TTTTTTTCCCTTTACCATTTCCTGCTTTTAACTTCTTGCCTCCATCTTTT
CCGCAATCTGTATTTTTTCTTCTCCCCTTTTCTTCCGCTTCTTTTTCGTT
TC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAATATTTCTTGTCAGGTCC
AAAGGAATTTGGATTCAATTCTTGTATATGACTTAGTAACAACAAATGTT
TGATGATTATAGTTCTAATTCTAAGGTTCTAAGATCTATTCAGGCTAGCA
AGAGCTAAATGAAGTTATATGTCTAGCCTCTTTGTCTTTTCTAGCTTTAT
TTTGACTCATTACCTAGCATGAGTTGATTCTTTATGTTGTCCACATATAC
TGTGCCACTCTGGGCAAAAGCATGTAAAGTTTAAGTTCATGATCCAAATT
ACCTGACCATTAACTTAGATGACTGCAGGTCACAAAGCTTTTTGTAGCAT
TTATGCAAACTCACTTTCTGTTTTTACTTATGCCTTATTTCCTTCTGGGA
GATTAAAAAAAATCACAGATTTGGCAAGGGAGGTTTTGTTGTTTAAAAGG
ACCGATTTCTGTACGTATGGTCCGACCTTCTGCTTCTTTGTACCTGCTAA
TGCTATATTTTCCATAGCTCTTGCTCTCATAGCCGAATTTATCTTTCTCT
TTTCATCCATTGTTTCTCACACTTATGTCTTACACCTGTGTCTTACTCTA
TTCTCCCTATCCATTTAACTTACCAACCCCCTACTCTTTTTTCTTTATCT
TTTTTTTTTTTTTATTTCTTCTTCCTTTACCCTCCTTACCCCCCCTCCCT
ACTCCCCCCCCTTTTCTCATCTCTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_e01.b1 MSMg01no472_e01.b1 CHROMAT_FILE:
MSMg01no472_e01.b1 PHD_FILE: MSMg01no472_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:49 2005
         (476 letters)



>mm_chr14_79578337_79579212
          Length = 876

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgcctttactatacacgtgggccaactgcccaccagaattaaaatatccatg 63
           ||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggaattcttgccaagaatatacacgtgggccaactgcccaccagaattaaaatatccatg 371

                                                                       
Query: 64  ttggtgagctacaggtttctttttttttctcccccattacaggtttctttatttcatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttggtgagctacaggtttctttttttttctcccccattacaggtttctttatttcatatt 311

                                                                       
Query: 124 tacatcaatatataatattcatttataattttgataaaggaatgatactccaaatatata 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tacattaatatataatattcatttataattttgataaaggaatgatactccaaatatata 251

                                                                       
Query: 184 aaattctcttaaaacccatgttctaaaaagttaaaaatgggcaaaaacctatgggaaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaattctcttaaaacccatgttctaaaaagttaaaaatgggcaaaaacctatgggaaaac 191

                                                                       
Query: 244 ctgttacactaaatgggcatattgtcaaattacattcttactatttatgtttacagtcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctgttacactaaatgggcatattgtcaaattacattcttactatttatgtttacagtcat 131

                                                                       
Query: 304 agatcagtgctgccctcagccttgctcagagagcttcttattgtggtggcagtgaatgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agatcagtgctgccctcagccttgctcagagagcttcttattgtggtggcagtgaatgct 71

                                                                       
Query: 364 gaggcaccactgaatgcacactctctggggggcatcgacatctccatgtttaaggctcag 423
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gaggcaccactgaatgcgcactctctggggggcatcgacatctccatgtttaaggctcag 11

                     
Query: 424 gaaacaaagc 433
           ||||||||||
Sbjct: 10  gaaacaaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_e01.g1 MSMg01no472_e01.g1 CHROMAT_FILE:
MSMg01no472_e01.g1 PHD_FILE: MSMg01no472_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:49 2005
         (401 letters)



>mm_chr14_79388603_79389403
          Length = 801

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaatatttcttgtcaggtccaaaggaatttggattcaattcttgtatatgacttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attaaaatatttcttgtcaggtccaaaggaatttggattcaattcttgtgtatgacttag 260

                                                                       
Query: 61  taacaacaaatgtttgatgattatagttctaattctaaggttctaagatctattcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacaacaaatgtttgatgattatagttctaattctaaggttctaagatctattcaggct 320

                                                                       
Query: 121 agcaagagctaaatgaagttatatgtctagcctctttgtcttttctagctttattttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaagagctaaatgaagttatatgtctagcctctttgtcttttctagctttattttgac 380

                                                                       
Query: 181 tcattacctagcatgagttgattctttatgttgtccacatatactgtgccactctgggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattacctagcatgagttgattctttatgttgtccacatatactgtgccactctgggca 440

                                                                       
Query: 241 aaagcatgtaaagtttaagttcatgatccaaattacctgaccattaacttagatgactgc 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aaagcatgtaaagtttaagttcatgatccaaattatctgaccattaacttagatgactgc 500

                                                                       
Query: 301 aggtcacaaagctttttgtagcatttatgcaaactcactttctgtttttacttatgcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtcacaaagctttttgtagcatttatgcaaactcactttctgtttttacttatgcctt 560

                                                    
Query: 361 atttccttctgggagattaaaaaaaatcacagatttggcaa 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttccttctgggagattaaaaaaaatcacagatttggcaa 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)