Query= MSMg01no472_f19.b1 MSMg01no472_f19.b1 CHROMAT_FILE:
MSMg01no472_f19.b1 PHD_FILE: MSMg01no472_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:58 2005
(454 letters)
>mm_chr14_24400784_24401638
Length = 855
Score = 787 bits (407), Expect = 0.0
Identities = 440/455 (96%), Gaps = 10/455 (2%)
Strand = Plus / Plus
Query: 5 ctctctctctctctctctccctctcaaaaaattcaaacaaagggtgtggccctatgtttt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctctctctctctctctttccctctcaaaaaattcaaacaaagggtgtggccctatgtttt 265
Query: 65 ggtcccttcaagcatctacatcaaaatacctttgactggataattgataacaacatagat 124
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 266 ggtcccttcaagcatctacatcaaaataccttt-actggataatttataacaacatagat 324
Query: 125 gtattgctcacaaatctggagggtgaagtgtccttgggtcaaggtaccaacatatgcagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtattgctcacaaatctggagggtgaagtgtccttgggtcaaggtaccaacatatgcagt 384
Query: 185 aatactattctgggtgccccattgtcatgacctaattaccatctagatgctactccttct 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 aatactattctgggtgccccattgtcatgacctaatcaccatctagatgctactccttct 444
Query: 245 aacgatg----tttttttagggtgaagcttctacatgtgaatttggcgaacactaatatt 300
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacgatgcaggttt----agggtgaagcttctacatgtgaatttggcgaacactaatatt 500
Query: 301 tagatcaaaagagcacacatctctaatgccattgcaaatcagaccaacagtaatgacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatcaaaagagcacacatctctaatgccattgcaaatcagaccaacagtaatgacatt 560
Query: 361 aactatttttttt-attaagaatctggaaatgtatttaaaacggaccttcttactctaca 419
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aactatttttttttattaagaatctggaaatgtatttaaaatggaccttcttactctaca 620
Query: 420 aggccaactgcaaagagaagaatctctgaaaagcc 454
|||||||||||||||||||| ||||||||||||||
Sbjct: 621 aggccaactgcaaagagaaggatctctgaaaagcc 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space: 375180
Effective search space used: 375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_f19.g1 MSMg01no472_f19.g1 CHROMAT_FILE:
MSMg01no472_f19.g1 PHD_FILE: MSMg01no472_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:58 2005
(462 letters)
>mm_chr14_24538023_24538883
Length = 861
Score = 832 bits (430), Expect = 0.0
Identities = 454/462 (98%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 1 tccagggaatgattctgctatggtggataaacatgttaattactcagaatttaatctcca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 tccagggaatgattctgctatgatggataaacatgttaattactcagaatttaatctcca 602
Query: 61 gctgccgcctttgtggcacttctccgcacagcccgagttgggggccttgcaggctggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctgccgcctttgtggcacttctccgcacagcccgagttgggggccttgcaggctggagt 542
Query: 121 caaaggagctgtctgaccctggggaatatcccccctccctaaattctgggctgctgtgtt 180
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 541 caaaggagctgtctgaccctggggaatatcccctctctctaaattctgggctgctgtgtt 482
Query: 181 catggggcacctgggcatgcagctcaagtcttttcctaggaggcagcaaatgtagacagt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catggggcacctgggcatacagctcaagtcttttcctaggaggcagcaaatgtagacagt 422
Query: 241 tattagatcccaagctctggcactcttgtgtcctggattcaaatcccagtgcttctgctt 300
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ta-gagatccccagctctggcactcttgtgtcctggattcaaatcccagtgcttctgctt 363
Query: 301 aggcatctctgtcccacatttcctaaccatgcagtgagtggttctaaagatgaaatgtgt 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggcatctctgccccacatttcctaaccatgcagtgagtggttctaaagatgaaatgtgt 303
Query: 361 ttatatgtgtaagagacttcaggggaacctggtgtctaagggaagcaattgttaatcgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttatatgtgtaagagacttcaggggaacctggtgtctaagggaagcaattgttaatcgtg 243
Query: 421 ttgtgtattgctttgcccctcccgtaggctttgccggtttgt 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgtgtattgctttgcccctcccgtaggctttgccggtttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space: 384652
Effective search space used: 384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
