BAC Information

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BAC

Clone NameMSMg01-472N18
Chromosome14 (Build37)
Map Location 74,640,672 - 74,825,937
singlet/doubletdoublet
Overlap geneLOC629583
Upstream geneRb1, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N18.T7 (MSMg01no472_n18.b1)MSMg01-472N18.TJ (MSMg01no472_n18.g1)
ACCAG555294AG555295
length767775
length of high quality
(start - end)		510 (47 - 556)509 (76 - 584)
definitionCHROMAT_FILE: MSMg01no472_n18.b1 PHD_FILE: MSMg01no472_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:38 2005CHROMAT_FILE: MSMg01no472_n18.g1 PHD_FILE: MSMg01no472_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,640,672 - 74,641,177)(74,825,431 - 74,825,937)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCATGACTTTGTGTCATCTTTGATTTTATAGAACACTCTTAA
GAGTCATTTTCAATTCATCACCATCACTGAAGGAGACTGAAAATGTGTGG
CCTTCTGTAGGCTAGTCTGTGGTTGTTTGAGACCCCATGCAGTCTTATGC
CTGAACTGATTACTGCAGGGGTATCCGTAGGTGCCTTACTTAAAACGAAT
CCCTCAAGAACCCTAAACAAGGATCAGAAACACTTTAATAGGAAGTCTAT
GTAGGATCCTTTGAAACATTATTTATTGAACTGAAATAACAACTGATTCT
AATCAAACTGACCTACTTAATCTGCAGAAGTTAAACCTGCAAGTACTTAT
CTCCTTAACCCTGCCCTTCGTGGACCACATAAAATTTTGGGTCCAAGCCT
TCTCCATGCAGGTACTTTACTCATTAAAGCAAATACCAACAGTTAATTTT
CTAGAAAAATACTCATGGAATTTCATCTCTGTCCTGTTAGNACTGCCTTC
CTAAGGTGTAATTTCTTCTTCACCTTTCACCAGTCACCTATATTTGACAT
TTTGACCTATAGACTTATATACCTATAATGTGTGAGATACCTATTATATA
TTTTTGATACCACCCCCCCCCCCCCCCTCTTTTTTTTTTTATTATTTACC
TATTCTAAACCTATTCTCCCGTGAAAAGAGAGGAATATTTGTCCATTACT
TATTTTAAACCCCCACG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACCATTTGAGCTGAAATTTGCCCT
TTCTAATTGTGTTAAAGGCCTTCATTTTGTTTTAGAATTCAAATGGGCTT
TAGGGTGATCAGCCATGGGAAATCCCAGGTTTTATTCTGGAAATTCTTTA
TTATCTCTCTCTATGGATGTATGAGTCCGGCAAAGTAGTAAAAAATGGGA
CAGGAACATAGTGGCTTCCAAGAGAGGGGCTTTCAGAGGCTATATGACTC
AGTAATTAATCTCATTGGCTTGTGAGAGTTGAGCTCTAACTTTAAAGCTG
TATGTATCTTAAATGGTGACCCAAGGTGATTAGAAGCCTAATATTAGTCT
ACTCAGAAAAGGCAAGGTATGTATTCAAGCAGAAGTCATGGACCAGACTG
CCCCAAGGCTTGTATCAGTCTGCAGTTTAACTTTGCATATGCAAACAAAC
ACTTCTTGCACTAATTTGAACCTCAGAACTGCCTTGCCAAATCTACTAAA
CTGTCTTTTGGCTTATAGGATGGAGCTGCTTCTCTCCTTAACCATGTTGA
ACACTATACAGAGAGCACAGGTGACCAACTTTCCTTCCCATTCTGTGTTC
TAATTGTAGCTGAAAATTTATGGTAGGAGTTTCAAATGAATGAGGTAACC
ATTTTGGCCATTTGCTGGGGTAAAACGGGAAGCTTCCTGGAGGGATTTAA
ATTTAATTGAATGAACCCAATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n18.b1 MSMg01no472_n18.b1 CHROMAT_FILE:
MSMg01no472_n18.b1 PHD_FILE: MSMg01no472_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:38 2005
         (510 letters)



>mm_chr14_74640468_74641377
          Length = 910

 Score =  872 bits (451), Expect = 0.0
 Identities = 492/506 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcatgactttgtgtcatctttgattttatagaacactcttaagagtcatttt 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcaggaatttgtgtcatctttgattttatagaacactcttaagagtcatttt 264

                                                                       
Query: 65  caattcatcaccatcactgaaggagactgaaaatgtgtggccttctgtaggctagtctgt 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 caattcatcaccatcactgaaggagactgaaaatatgtggccttctgtaggctagtctgt 324

                                                                       
Query: 125 ggttgtttgagaccccatgcagtcttatgcctgaactgattactgcaggggtatccgtag 184
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 325 ggttgtttgagaccccatgcagtcttatgtctgaactgattactgcaggggtatccatag 384

                                                                       
Query: 185 gtgccttacttaaaacgaatccctcaagaaccctaaacaaggatcagaaacactttaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgccttacttaaaacgaatccctcaagaaccctaaacaaggatcagaaacactttaata 444

                                                                       
Query: 245 ggaagtctatgtaggatcctttgaaacattatttattgaactgaaataacaactgattct 304
           |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |
Sbjct: 445 ggaagtctatgtaggatcctttgaaacattaaatattgaactgaaataacaactgattat 504

                                                                       
Query: 305 aatcaaactgacctacttaatctgcagaagttaaacctgcaagtacttatctccttaacc 364
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 aaccaaactgacctacttaatctgcagaagttacacctgcaagtacttatctccttaacc 564

                                                                       
Query: 365 ctgcccttcgtggaccacataaaattttgggtccaagccttctccatgcaggtactttac 424
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcccttcatggaccacatcaaattttgggtccaagccttctccatgcaggtactttac 624

                                                                       
Query: 425 tcattaaagcaaataccaacagttaattttctagaaaaatactcatggaatttcatctct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcattaaagcaaataccaacagttaattttctagaaaaatactcatggaatttcatctct 684

                                     
Query: 485 gtcctgttagnactgccttcctaagg 510
           |||||||||| |||| ||||||||||
Sbjct: 685 gtcctgttagtactgtcttcctaagg 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no472_n18.g1 MSMg01no472_n18.g1 CHROMAT_FILE:
MSMg01no472_n18.g1 PHD_FILE: MSMg01no472_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:38 2005
         (509 letters)



>mm_chr14_74825231_74826139
          Length = 909

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccatttgagctgaaatttgccctttctaattgtgttaaaggccttcattttgttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaccatttgagctgaaatttgccctttctaattgtgttaaaggccttcattttgttttag 648

                                                                       
Query: 61  aattcaaatgggctttagggtgatcagccatgggaaatcccaggttttattctggaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aattcaaatgggctttagggtgatcagccatgggaaatcccaggttttattctggaaatt 588

                                                                       
Query: 121 ctttattatctctctctatggatgtatgagtccggcaaagtagtaaaaaatgggacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctttattatctctctctatggatgtatgagtccggcaaagtagtaaaaaatgggacagga 528

                                                                       
Query: 181 acatagtggcttccaagagaggggctttcagaggctatatgactcagtaattaatctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acatagtggcttccaagagaggggctttcagaggctatatgactcagtaattaatctcat 468

                                                                       
Query: 241 tggcttgtgagagttgagctctaactttaaagctgtatgtatcttaaatggtgacccaag 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tggcaagtgagagttgagctctaactttaaagctgtatgtatcttaaatggtgacccaag 408

                                                                       
Query: 301 gtgattagaagcctaatattagtctactcagaaaaggcaaggtatgtattcaagcagaag 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtgattaggagcctaatattagtctactcagaaaaggcaaggtatgtattcaagcagaag 348

                                                                       
Query: 361 tcatggaccagactgccccaaggcttgtatcagtctgcagtttaactttgcatatgcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcatggaccagactgccccaaggcttgtatcagtctgcagtttaactttgcatatgcaaa 288

                                                                       
Query: 421 caaacacttcttgcactaatttgaacctcagaactgccttgccaaatctactaaactgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 caaacacttcttgcactaatttgaacctcagaactgccttgccaaatctactaaactgtc 228

                                      
Query: 481 ttttggcttataggatggagctgcttc 507
           |||||||||||||||||||||||||||
Sbjct: 227 ttttggcttataggatggagctgcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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