BAC Information

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BAC

Clone NameMSMg01-473K14
Chromosome14 (Build37)
Map Location 98,909,432 - 98,909,940
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K14.T7 (MSMg01no473_k14.b1)MSMg01-473K14.TJ (MSMg01no473_k14.g1)
ACCAG555908AG555909
length1,438777
length of high quality
(start - end)		---509 (78 - 586)
definitionCHROMAT_FILE: MSMg01no473_k14.b1 PHD_FILE: MSMg01no473_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:50 2005CHROMAT_FILE: MSMg01no473_k14.g1 PHD_FILE: MSMg01no473_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATCCACTTCTCTGTTGCCGCGGCCGGTACACTAAGAGATCCGAACCT
CCTTCTCCCAATAGCACACACCGGCGCTNATCTCTCGCTCTCTCCCTCTG
TTCCCCCGTACATACCTGCACACTATTCCCTCGCCGTCCTCTCCACCGCA
CGCGGCCGCGCACCACGATGGAACCAGAAGCGCACCCACATATATACCAA
AATAGTGATAAATACATAGTATCAGATCTTAGTTAGCGTCTTAACCCATA
AACCATATACGTGCTGGCTCCACGGCTCCTCACTATGGCGCACGCGTGTG
CCTGTGTGAGCTGCTAGGGTCCATCGCGCGGGTGTTGTGAAGGCCATATC
CTCACGGATGAAGACATAACTTGTACATTAATGATATTATTAAATAAAAA
TCAAGTACTACACTCTACATGCAAATATGTACAAGTATATACCTCGACAT
ACCACATATACGCAGGTCTGCGCGTCTCGGTAGCTACCGCGGACGATCCC
TATCCGTACTACATGCCGCTGTGAGGCGAGTGGTCGCGTGTCATGCGCAC
GATCTACTCTGTCTCGGATTACACGGTGTCACGCTACATATGGTACGAGT
AGCAGGCGTAGAGTGCAGTGTTGGGTGTCACATCATCATACACCGTCTCA
CACTCTCATAAAATGTGGAAGAGGCAGTAGACGCACGAACCTTGCAACCA
TGTATAACCAAACTCGTCGGTGCGCTGCGCGAGACACCGCCGTATGCAAC
GCTTCCTCTGTAAGCGTNTAGCTAATACAGCTTAGCGAGAAAGAAGATCA
TGAGACTCAATAGTACACGTACCGCTCCCGATCTTCACATCTGCTGAGTA
TGTGCGCGTNGACAACGATGGAGTGAAGCTATGGTCGTGTACTGGATNCT
TCATCTCGCANGGAGTACTAGCGCGCATACGAGTCTATATATAGCAGATG
GTACGCATGTATATATATATTGTAGACTACTCACGGACACACCATCGCAT
ACGTACAGTAGACGCTGACTAATGCTGCCGCCTCGATAGTTCAGCTTCCG
ACGGTCTTGACGCGCATCGGATGTACTCGCCGCGCGCAGCCGTCGTGAGC
CGCCGATCGCTGACAGACGGCCTAAGGTGCGCGTGTATCCATACATGCTG
CACGCACCTGTACGCTCTTATACTCGCATCGCACAATACGGATAGTCATC
GCCGACGCGCAATGCTGCAGCGATCGACAATATCAACCTACATCAGCTCT
ATAGCATATTCTAACTAGCCACGCATGGTCGACGCGAGTGCGTAGCAGAT
ATCTAGAAATCACGTAATTTAGTACATCTGCTCATTAATGTTGTCGTCTA
ATGGAGTGTGCAGACAGCGAGACGGCGAAACACAACACGTATCAATATCA
GCTACGACCGCGAGAGTGCGGTGGGTGGATGTTGTGTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGATAAGATGTGTAAGGGAC
TTTCTGAAAACAAATCACCAAGGCAAATATTCTTGCCTAAAAAACCATGA
CAAAGTGTATAAATAAATGGCAATTTTTAATTTGAAATTGTTGAAACAAC
TCCTGGATATATGTAATATTCTCATCAACTTTTCTAAAGATATTTTTGGT
AGAAAAATGAGTTGAACAGTTTTAATTGTCAAGCTCACCCAAACTGCAGA
TATTAGACCAGCTTGGGGGGGTTCAAAGAATAATTGTTTAACCTTGCTAG
ACAAATCATAACAATATTAGAATATTTTCCTGATCTGATCATAGAACTAA
TCTGATAAAGAGGTCAATATTTGACACATGTATGGAACTGACAGAAGAAT
GCTGAATATTTATAGAACCAAATGAGATGTTAGCAGATCAAAATTATGTT
AGAGAAGGGAAAGACAAGATATTTACAACTTATGGAGGAAGATAGGAGTC
TTAAACAAACCTGTGCACACACATACGTACACATTAGTAGTAGACAATTT
TTAAAGTAAATGTAAAACCAAGCCATTTGAACTAGATAGTGGATTATTTG
TTCTTATTTGAACTGAAGAGAATTTGAGTAGCTTTTACATTATTGTGCGA
ATAATATTTGTTTATTGCCCACACCGAAAATGTAATCCAAATGTGTTTGA
AAAAAAATGATTAATGTACCCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k14.g1 MSMg01no473_k14.g1 CHROMAT_FILE:
MSMg01no473_k14.g1 PHD_FILE: MSMg01no473_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:50 2005
         (509 letters)



>mm_chr14_98909232_98910140
          Length = 909

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgataagatgtgtaagggactttctgaaaacaaatcaccaaggcaaatattcttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctatgataagatgtgtaagggactttctgaaaacaaatcaccaaggcaaatattcttgcc 650

                                                                       
Query: 61  taaaaaaccatgacaaagtgtataaataaatggcaatttttaatttgaaattgttgaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 taaaaaaccatgacaaagtgtataaataaatggcaatttttaatttgaaattgttgaaac 590

                                                                       
Query: 121 aactcctggatatatgtaatattctcatcaacttttctaaagatatttttggtagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aactcctggatatatgtaatattctcatcaacttttctaaagatatttttggtagaaaaa 530

                                                                       
Query: 181 tgagttgaacagttttaattgtcaagctcacccaaactgcagatattagaccagcttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgagttgaacagttttaattgtcaagctcacccaaactgcagatattagaccagcttggg 470

                                                                       
Query: 241 ggggttcaaagaataattgtttaaccttgctagacaaatcataacaatattagaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggggttcaaagaataattgtttaaccttgctagacaaatcataacaatattagaatattt 410

                                                                       
Query: 301 tcctgatctgatcatagaactaatctgataaagaggtcaatatttgacacatgtatggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcctgatctgatcatagaactaatctgataaagaggtcaatatttgacacatgtatggaa 350

                                                                       
Query: 361 ctgacagaagaatgctgaatatttatagaaccaaatgagatgttagcagatcaaaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgacagaagaatgctgaatatttatagaaccaaatgagatgttagcagatcaaaattat 290

                                                                       
Query: 421 gttagagaagggaaagacaagatatttacaacttatggaggaagataggagtcttaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gttagagaagggaaagacaagatatttacaacttatggaggaagataggagtcttaaaca 230

                                        
Query: 481 aacctgtgcacacacatacgtacacatta 509
           |||||||||||||||||||||||||||||
Sbjct: 229 aacctgtgcacacacatacgtacacatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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