BAC Information

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BAC

Clone NameMSMg01-474D03
Chromosome14 (Build37)
Map Location 65,980,099 - 65,980,501
singlet/doubletsinglet
Overlap genenone
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16
Downstream geneZfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D03.T7 (MSMg01no474_d03.b1)MSMg01-474D03.TJ (MSMg01no474_d03.g1)
ACCAG556314AG556315
length744748
length of high quality
(start - end)
352 (75 - 426)422 (73 - 494)
definitionCHROMAT_FILE: MSMg01no474_d03.b1 PHD_FILE: MSMg01no474_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:33 2005CHROMAT_FILE: MSMg01no474_d03.g1 PHD_FILE: MSMg01no474_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACAGATCCGCG
GAATTCCACTCCTTACCAACAGGCACAAGGCCTGTGTCCACTACAGACCA
TGTATGATCATTCACGACTACTTCAATCAGATTAAAAAAATTTTTTTAAG
GTTATTTATTTTTATTTTATGTGTATGGGTGTTTTGCCTGCATACATATA
TATGTGTGCTATATGCTTGGATATGCCCATGGATATCAGAAGAGGTTACC
AGTTCCCTGGAACTGGAGTTACAAATGGTTGTGAGCCTCAGTGTAGGTAG
TAGGAACTGAACCTGTTTTTTCTGTAAGATTAGCAAAAAGACTGGAGATG
ATTGGGACAGTAGAACCCTGTCCTCTGGGGAGAATTAAATGTCTACCTCT
CATGCTCCTGTAACAAACCAAGTTCACTCTGGGCAACGAGTGAGTTTATT
ACAATTACTTACAGAGTATCGAATGCAACTATAGCTAATGTCATGTATGG
CACTAAGGCAGCCACACTATATAGCCTGCAGCCTGCACGCCTGGCGTGTA
TCTAGAGCCCTCCCCCGGTCCCCCCTTCCTCACCTATATTCCTTTACCCC
TTCCCTTGTCAACCCCTCTTTCTCCTACCTGCCTTGCCCACAATGCCCAT
ATTTTCACTCATTTTGCCTCGTAAATAATCGGCCCCCTCCCGTAATTGCT
CCTCCTTTAACCCTCATACTGCTTCTCTCTTTTCTTCTTCTGTC
CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCGTGTCTGTTCTGTACAACTGTTAC
TGTAAGGAAAAAATGCCTGTGACGACGGCTCAGGCCTGCCAAGGCAGGAG
GATTGCTGTGAATTCAAGGCTCCTGGGTTACAGAGCAAGAAGGACTGAAG
AGAAAGAAGGAAAAGGAAGGGAGAAGAGGAAAGGGAAAAGAAGGGGAGGA
CGACAAGGGAAGAAGAGAAAAGGAGAGGAAGGTAGAAAAGAGGAAGGAAC
CAAAGGAAAGAACAGGTTTTTAGGAGGAGAGAACATGGCCCTTACGGCCT
CCAGTCCCATCCCTCAAGCTCCTCTCCCCCTCAATTCACTGATTCTGCAT
CTCAGAGAAGTAAGCAGCTGAAACAAAAATCCCAGCTCATGCCACAACCT
TCTGTAACTATTCTTCAAATTCAGATGTTGCACGCTGACACTTGGGGGAT
TTGTTCAGCACATCACCCTAAGTCACTCTTGCTAAAGAGAGAGCATACTC
CTGTGGAAAGGAAAAACAATTCTCAAGAGTGCCCGTCTCCCCTTCTATGC
CCTTCTCCCCAAAACCCTGAGACAGGGTTACTGGTATGGTACTGGGGATA
ATCTTCTTCCCTTCCAAAGGTCTCTAAAATTCCCGGCCTTTCCGTTAAAC
CGGACCTTCGCTGGTTCACTCCATCCTCCTGCTACTTATCCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d03.g1 MSMg01no474_d03.g1 CHROMAT_FILE:
MSMg01no474_d03.g1 PHD_FILE: MSMg01no474_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
         (422 letters)



>mm_chr14_65979679_65980501
          Length = 823

 Score =  702 bits (363), Expect = 0.0
 Identities = 394/411 (95%), Gaps = 14/411 (3%)
 Strand = Plus / Minus

                                                                       
Query: 18  acaactgttactgtaaggaaaaaatgcctgtgacgacggctcaggcctgccaaggcagga 77
           |||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 823 acaactgttactgtcaggaaaaaatgcctgt---gacggctcaggcctgccaaggcagga 767

                                                                       
Query: 78  ggattgctgtgaattcaaggctcctgggttacagagcaagaaggactgaagagaaagaag 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggattgctgtgaattcaaggctcctgggttacagagcaagaaggactgaagagaaagaag 707

                                                                       
Query: 138 gaaaaggaagggagaagaggaaagggaaaagaaggggaggacgacaagggaagaagagaa 197
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaaaagaaagggagaagaggaaagggaaaagaaggggaggacgacaagggaagaagagaa 647

                                                                       
Query: 198 aaggagaggaaggtagaaaagaggaaggaaccaaaggaaagaacagg----tttttagga 253
           |||||||||||||||||||||||||||||||||||||||||||||||         ||||
Sbjct: 646 aaggagaggaaggtagaaaagaggaaggaaccaaaggaaagaacaggagaa-----agga 592

                                                                       
Query: 254 ggagagaacatggcccttacggcctccagtcccatccctcaagctcctctccccctcaat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggagagaacatggcccttacggcctccagtcccatccctcaagctcctctccccctcaat 532

                                                                       
Query: 314 tcactgattctgcatctcagagaagtaagcagctgaaacaaaaatcccagctcatgccac 373
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 531 tcactgattctgcatctcagagaagtaagcagctgaaacgaaaatcccagctcatgccac 472

                                                              
Query: 374 aaccttctgtaac--tattcttcaaattcagatgttgcacgctgacacttg 422
           |||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaccttctgtaaccttattcttcaaattcagatgttgcacgctgacacttg 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)