Query= MSMg01no474_p19.b1 MSMg01no474_p19.b1 CHROMAT_FILE:
MSMg01no474_p19.b1 PHD_FILE: MSMg01no474_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:37 2005
(314 letters)
>mm_chr14_82507489_82508205
Length = 717
Score = 489 bits (253), Expect = e-143
Identities = 279/289 (96%), Gaps = 5/289 (1%)
Strand = Plus / Minus
Query: 1 cttgtggttcaaatgtctatattaggttaacatttcaccaacattgtttcttgacttaca 60
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 448 cttgtggttcaaatgtctatattagtttaacatttcaccaacattatttcttgacttaca 389
Query: 61 acaaaaattaataggtgcttaaaatgatagattttggaatactttaacaatgtccatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acaaaaattaataggtgcttaaaatgatagattttggaatactttaacaatgtccatgtt 329
Query: 121 tcttcatttataacattattacactaagttggtgcattcttaatgggaaaaaattattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcttcatttataacattattacactaagttggtgcattcttaatgggaaaaaattattca 269
Query: 181 caaaataaaattatccacataatttctatttaaatagtttac---ataatccatataatt 237
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 caaaataaaattatccacataatttctatttaaatagtttacataataatccatataatt 209
Query: 238 atctcctggatagatttatagatagatagat-agatagatagatagata 285
||| |||||||||| ||||||||||||||| | |||||||||||||||
Sbjct: 208 atcccctggatagaaatatagatagatagatca-atagatagatagata 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 717
Length adjustment: 9
Effective length of query: 305
Effective length of database: 708
Effective search space: 215940
Effective search space used: 215940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_p19.g1 MSMg01no474_p19.g1 CHROMAT_FILE:
MSMg01no474_p19.g1 PHD_FILE: MSMg01no474_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:37 2005
(468 letters)
>mm_chr14_82322669_82323536
Length = 868
Score = 791 bits (409), Expect = 0.0
Identities = 455/477 (95%), Gaps = 13/477 (2%)
Strand = Plus / Plus
Query: 1 agcatagcgacacactattggcttattcaaacattagcagaaagggcatcaggactttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatagcgacacactattggcttattcaaacattagcagaaagggcatcaggactttgt 260
Query: 61 tcctgtgggctgggggcttatctttgttcacatagcaaccagttgatgtatgactttacc 120
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgagggttgggggcttatctttgttcacatagcaaccagttgatgtatgactttacc 320
Query: 121 catcgtcaaggggcaatagacagatgtgaggttcctgccagatggtgttggcttagataa 180
|| | ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 321 cagcatcaaggggcaatagacagaggggaggttcctgccagatggtgttggcttagataa 380
Query: 181 tatagccctgctggtccttgcatacctttttatcttttcagtcaagatgttcttaggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagccctgctggtccttgcatacctttttatcttttcagtcaagatgttcttaggaat 440
Query: 241 gccttatttt----cagtccggccctggcatgcctgggggctgttcttctttgttctcag 296
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctta----acaacagtccggccctggcatgcctgggggctgttcttctttgttctcag 496
Query: 297 tcccaggccagggctgtgggctcctaaactcacaagttacaatattttatcttccttcaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcccaggccagggctgtgggctcctaaactcacaagttacaatattttatcttccttcaa 556
Query: 357 tatgatatttgaaagactgacttttgttgattttgtgtttaggttttttgagacaggaaa 416
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 557 tatgatatttgaaagactgacttctgttgattttgtgtttaggttttttgagacagaaaa 616
Query: 417 ataccattttgctatgactggtttcaaacattttttttttta-----atatctcagt 468
||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 617 ataccattttgctatgactggtttcaaacatttttttttatatatatatatctcagt 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
