MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-475P07
Chromosome	14 (Build37)
Map Location	61,283,477 - 61,283,700
singlet/doublet	singlet
Overlap gene	Spata13
Upstream gene	Atp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836
Downstream gene	C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
Link	Open Mouse BAC browser

Click to get alignment info.

name	Atp8a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50769 MGI:1354710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668162 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 506 ESTs, 8 Proteins pseudo : _no_value

name	LOC628768 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 8 Proteins pseudo : _no_value

name	Nupl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71844 MGI:1919094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtmr6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:219135 MGI:2145637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2600011E07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72125 MGI:1919375
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps14_696.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606535
definition	note : peptidylprolyl isomerase A pseudogene 14_696.1 pseudo : _no_value

name	EG628836 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628836 MGI:3647124
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Spata13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:219140 MGI:104838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 202 ESTs, 4 Proteins

name	C1qtnf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239126 MGI:3045252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mipep (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70478 MGI:1917728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043586 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043586
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	Tnfrsf19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29820 MGI:1352474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sacs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50720 MGI:1354724
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgcg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24053 MGI:1346524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:219144 MGI:2444054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG432864 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432864 MGI:3646225
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 727 ESTs, 28 Proteins pseudo : _no_value

name	Ebpl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68177 MGI:1915427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kpna3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16648 MGI:1100863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042933 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042933
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG432865 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432865 MGI:3646224
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 416 ESTs, 7 Proteins

name	6330409N04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66674 MGI:1913924
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042941 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	Trim13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66597 MGI:1913847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnrg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328424 MGI:2685591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668253 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Atp8a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131094 GeneID:50769 MGI:1354710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 transcript_id : NM_015803.2

name	Nupl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24497430 GeneID:71844 MGI:1919094
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleoporin like 1 transcript_id : NM_170591.1

name	Mtmr6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130049 GeneID:219135 MGI:2145637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myotubularin related protein 6 transcript_id : NM_144843.3

name	2600011E07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367430 GeneID:72125 MGI:1919375
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2600011E07 gene transcript_id : NM_028113.2

name	Spata13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397196 GeneID:219140 MGI:104838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 202 ESTs, 4 Proteins product : spermatogenesis associated 13, transcript variant 7 transcript_id : XM_901902.2

name	C1qtnf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892199 GeneID:239126 MGI:3045252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : C1q and tumor necrosis factor related protein 9 transcript_id : NM_183175.3

name	Mipep (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377084 GeneID:70478 MGI:1917728
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial intermediate peptidase transcript_id : NM_027436.2

name	LOC100043586 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265772 GeneID:100043586
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : hypothetical protein LOC100043586 transcript_id : XM_001480382.1

name	Tnfrsf19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343986 GeneID:29820 MGI:1352474
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 19 transcript_id : NM_013869.4

name	Sacs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370978 GeneID:50720 MGI:1354724
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sacsin transcript_id : NM_172809.3

name	Sgcg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125490359 GeneID:24053 MGI:1346524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sarcoglycan, gamma (dystrophin-associated glycoprotein) transcript_id : NM_011892.3

name	Arl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476057 GeneID:219144 MGI:2444054
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor-like 11 transcript_id : NM_177337.3

name	Ebpl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374298 GeneID:68177 MGI:1915427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : emopamil binding protein-like transcript_id : NM_026598.2

name	Kpna3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88014722 GeneID:16648 MGI:1100863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : karyopherin (importin) alpha 3 transcript_id : NM_008466.3

name	EG432865 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397199 GeneID:432865 MGI:3646224
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 416 ESTs, 7 Proteins product : predicted gene, EG432865 transcript_id : XM_484385.4

name	6330409N04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387098 GeneID:66674 MGI:1913924
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330409N04 gene transcript_id : NM_025697.2

name	Trim13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348908 GeneID:66597 MGI:1913847
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 13 transcript_id : NM_023233.2

name	Kcnrg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46195443 GeneID:328424 MGI:2685591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel regulator transcript_id : NM_206974.1

name	Kcnrg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802287 GeneID:328424 MGI:2685591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel regulator transcript_id : NM_001039105.2

name	LOC668253 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94397200 GeneID:668253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : similar to sterile alpha motif domain containing 1 transcript_id : XM_001000367.1

name	Atp8a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7656912 CCDS:CCDS27174.1 GeneID:50769 MGI:1354710
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA] codon_start : 1 note : ATPase, class 1, member a; ATPase 8A2, p type; ATPase 8A2, class I product : ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 protein_id : NP_056618.1

name	Nupl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24497431 CCDS:CCDS27175.1 GeneID:71844 MGI:1919094
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : nucleoporin like 1 protein_id : NP_733479.1

name	Mtmr6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450239 CCDS:CCDS27176.1 GeneID:219135 MGI:2145637
definition	GO_function : GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA] GO_process : GO:0046839 - phospholipid dephosphorylation [Evidence IEA] codon_start : 1 product : myotubularin related protein 6 protein_id : NP_659092.1

name	2600011E07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037287 CCDS:CCDS27177.1 GeneID:72125 MGI:1919375
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : hypothetical protein LOC72125 protein_id : NP_082389.1

name	Spata13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94397197 GeneID:219140 MGI:104838
definition	codon_start : 1 product : spermatogenesis associated 13 isoform 7 protein_id : XP_906995.2

name	C1qtnf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63999399 CCDS:CCDS27178.1 GeneID:239126 MGI:3045252
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : C1q and tumor necrosis factor related protein 9 protein_id : NP_898998.2

name	Mipep (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076953 GeneID:70478 MGI:1917728
definition	GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial intermediate peptidase protein_id : NP_081712.1

name	LOC100043586 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265773 GeneID:100043586
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480432.1

name	Tnfrsf19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981428 GeneID:29820 MGI:1352474
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : tumor necrosis factor receptor superfamily, member 20 product : tumor necrosis factor receptor superfamily, member 19 protein_id : NP_038897.3

name	Sacs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85677482 CCDS:CCDS27180.1 GeneID:50720 MGI:1354724
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0050750 - low-density lipoprotein receptor binding [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : sacsin protein_id : NP_766397.2

name	Sgcg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755488 CCDS:CCDS27181.1 GeneID:24053 MGI:1346524
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0016012 - sarcoglycan complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016044 - membrane organization and biogenesis [Evidence TAS] codon_start : 1 note : sarcoglycan, gamma (35kD dystrophin-associated glycoprotein) product : sarcoglycan, gamma (dystrophin-associated glycoprotein) protein_id : NP_036022.1

name	Arl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476058 CCDS:CCDS27182.1 GeneID:219144 MGI:2444054
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : ADP-ribosylation factor-like tumor suppressor protein 1 product : ADP-ribosylation factor-like 11 protein_id : NP_796311.2

name	Ebpl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386086 CCDS:CCDS27183.1 GeneID:68177 MGI:1915427
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0047750 - cholestenol delta-isomerase activity [Evidence IEA] GO_process : GO:0016125 - sterol metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : emopamil binding related protein, delta8-delta7 sterol isomerase related protein protein_id : NP_080874.1

name	Kpna3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680596 GeneID:16648 MGI:1100863
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006606 - protein import into nucleus [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : karyopherin (importin) alpha 3 protein_id : NP_032492.1

name	EG432865 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51768484 GeneID:432865 MGI:3646224
definition	codon_start : 1 product : similar to 40S ribosomal protein S12 protein_id : XP_484385.1

name	6330409N04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228993 CCDS:CCDS27185.1 GeneID:66674 MGI:1913924
definition	codon_start : 1 product : hypothetical protein LOC66674 protein_id : NP_079973.1

name	Trim13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14149754 CCDS:CCDS27186.1 GeneID:66597 MGI:1913847
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA] codon_start : 1 note : ret finger protein 2 product : tripartite motif protein 13 protein_id : NP_075722.1

name	Kcnrg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84993724 CCDS:CCDS27187.1 GeneID:328424 MGI:2685591
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; CLLD4-like product : potassium channel regulator isoform 1 protein_id : NP_001034194.1

name	Kcnrg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46195444 GeneID:328424 MGI:2685591
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; CLLD4-like product : potassium channel regulator isoform 2 protein_id : NP_996857.1

name	LOC668253 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94397201 GeneID:668253
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001000367.1

name	EG628836 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628836
definition	number : 2 pseudo : _no_value

name	EG628836 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628836
definition	number : 1 pseudo : _no_value

name	LOC100042933 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042933
definition	number : 1 pseudo : _no_value

name	LOC668162 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265768 GeneID:668162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 506 ESTs, 8 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_034652.1

name	LOC628768 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265769 GeneID:628768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 8 Proteins product : similar to suppressor of initiator codon mutations, related sequence 1 pseudo : _no_value transcript_id : XR_034656.1

name	EG432864 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94397198 GeneID:432864 MGI:3646225
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 727 ESTs, 28 Proteins product : predicted gene, EG432864 pseudo : _no_value transcript_id : XR_002157.1

name	LOC100042941 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265631 GeneID:100042941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to proteasome (prosome, macropain) subunit, alpha type 2 pseudo : _no_value transcript_id : XR_034065.1

clone name	MSMg01-422B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083K04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-087K15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-232D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418J08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-097H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480J16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-300A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-475P07.T7 (MSMg01no475_p07.b1)	MSMg01-475P07.TJ (MSMg01no475_p07.g1)
ACC	AG557661	AG557662
length	775	766
length of high quality (start - end)	245 (78 - 322)	229 (81 - 309)
definition	CHROMAT_FILE: MSMg01no475_p07.b1 PHD_FILE: MSMg01no475_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005	CHROMAT_FILE: MSMg01no475_p07.g1 PHD_FILE: MSMg01no475_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCCCTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAACA GCGCGGAATTCATTCATATGACATTATTTTATCGTGTAATTAATATAAAA TTAATTAATCATTTAAGTTATTTTTTAAAATTATGTCTTGGTAATCAAGT GTGAAAGTTATATTTACAACACATTTCAACACAGAGTGTTCATGTGCTAG GAGAACAAAGGTCCTTGCATTCACAAACAGACACGAAGGAAAACAAGAAT GTTGAACACGTATGGAGGCTTGTCTCTTCAATGTGAGAGATGTACAACCA GTTTCTCCACCCAGAAGGCTGGGAATGGATGNTTTCAATAGCCTAGTGAT CTGTGTTGTCTGTAGGGTCAGGCCATACCAAGCTCCCATAGCAGGACCAA AGATGGCTGATGGTCTAGGTGACCTCTGTGTTATCTGTATGGTCAGGTGC TCTGCCAAGATCCCACAACCATGATCAGAGGTAGTTAATACCCTAGATGA CCTCTACTCTATCTGCATGATCTAAACTACTCCAGGTCCTCCCCCAGGTC TTTACCATACCCCGCGCAGCTCTATCTTCAGCTAATCCTTCCCTTGTTAA CAATTTCTTCTTTTTTTTACCACTATATTTTTTCCGCCTTCATTTATTCC CTGCCCACCGACATTCTCCCCCTTTTTTTCCCCCTCTCTTTCTTTCTCCC CTTTACTCCCCCTCATTATCTCCCTTCTCTTTCCCCTTATTAGCTCCCTC CCTTTTCTACCTATCTTATTCTCTT	CCCCCTCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCAAGTCAACTCTGG GGGAGGGGGAAGTGCTCTCTGAGATCCTGCAGGGAGCCCACTGTGCTGTT ACTAGTTAACATCCAGGTTTGTATAAACCAACTTTTAAATTCTGTCTGAG GAGCACAGAATGGTGGGCAGGGAATCATTAATCTGCAGAGTGGCCTAATC CTGTGGTGACCACATCTGGGAACACAACACACCATCCTAGCTCCCCAGCT ACTTTGTCTTGTCTCTCTTCTTTTTTGTGAGCTGTGCTTTCCCATCGGTG GTTCTCCACAAATTCCTTAGCCTACTGAACTGACCCTGGTTACCTTCTCA GAGATTTTCTACCGCCCTTCCTACACATTTAAGAAACAATACCTTCCTTC ATCTCCTCCTGTCTTATTCTATACCCCCTCGTTGCTTCCCCTATCCTTCT ACTTCACTCCGTTTGTTTTTTCTTTATCCCCCCCCCATTTTTCTCCCCTT CTTTTCCCTCCCCTTTTATCCCCTTTCGTCCCTCTCCTTTTCCCCTTTTC CTCCCTGTCTCCTTCCCTCCCCCTCTTCCATTTCCCCTACATTTCCCGCC CCCTCTTCCCCTCTCTCTCTCTTTTCGTCCCCCCTTTCTCCCTCTTCCCC TTCCCTTCCTTTTTTTTCCCCTATTTACTCTCCCCCTTTCTCTCTTTCCC CATCTCCTTCTTTCTG
quality values	Open. Hide. 7 15 7 7 6 6 7 6 8 8 10 11 19 22 20 27 28 21 21 12 12 12 23 26 30 30 28 29 28 33 37 41 22 17 18 14 13 10 11 10 8 9 7 7 6 6 6 6 6 8 8 11 11 21 25 31 31 31 33 33 33 29 28 19 7 6 6 6 6 6 6 6 7 8 10 13 15 17 24 27 32 32 37 34 47 59 57 57 57 53 53 53 53 53 50 50 59 53 48 48 48 48 47 54 54 54 48 42 42 34 34 37 46 44 57 57 68 68 68 68 68 68 68 59 57 34 30 16 15 16 24 30 38 57 57 57 57 44 44 33 33 30 42 42 50 47 43 46 43 43 43 46 46 54 50 50 57 57 57 57 57 57 57 57 57 57 43 43 32 35 35 43 50 57 57 57 57 57 54 50 57 47 47 47 47 47 48 59 57 57 57 57 57 57 54 54 57 57 44 43 37 37 37 37 57 57 57 48 48 48 48 48 48 54 59 44 32 32 32 44 44 57 57 54 54 46 48 40 43 43 43 43 48 43 43 43 36 36 43 43 47 47 57 48 47 42 48 48 48 57 48 48 48 48 39 30 24 14 14 13 13 12 12 15 15 28 32 59 59 59 59 48 48 48 59 48 43 43 39 39 39 43 39 47 59 59 57 48 43 43 48 48 48 57 48 54 54 48 48 48 48 48 48 57 57 48 48 48 57 57 47 47 40 39 43 43 43 37 37 32 22 15 12 11 20 9 9 9 9 9 3 0 3 12 23 23 36 31 31 25 25 25 28 34 28 28 32 24 28 32 37 43 48 48 48 59 43 43 43 48 48 43 28 21 14 12 12 11 11 11 10 12 15 15 32 32 28 24 21 16 18 18 30 30 37 37 30 30 30 40 37 30 28 15 14 18 21 18 14 14 14 14 14 30 28 32 24 20 24 25 25 18 17 27 24 21 13 17 25 26 28 30 27 15 12 13 13 28 28 39 31 32 39 34 28 26 14 14 18 16 14 16 16 20 19 17 10 10 10 10 12 23 26 28 28 24 19 12 12 12 24 24 29 22 17 17 17 22 25 20 23 16 19 10 10 10 10 11 11 11 11 10 10 10 10 15 16 16 13 10 9 9 10 15 10 10 12 16 16 15 15 12 10 14 14 11 11 11 11 10 19 15 20 16 12 8 8 8 12 8 8 8 8 8 8 10 8 8 10 10 19 19 12 10 12 12 11 10 12 18 21 26 30 19 19 13 11 11 9 9 9 10 9 9 10 9 9 10 11 10 10 10 10 9 8 8 8 8 8 8 8 8 10 12 11 9 9 9 9 9 10 9 9 9 9 12 11 8 8 8 8 8 15 13 8 8 8 8 8 9 9 10 10 10 12 8 8 8 8 8 13 15 20 19 26 17 10 8 6 8 6 6 6 6 8 8 8 8 15 12 11 12 9 10 9 10 10 13 16 12 10 10 10 15 15 12 10 7 6 8 8 8 8 8 8 6 7 10 6 6 8 8 8 8 10 8 11 11 9 12 10 16 13 13 18 29 20 14 13 10 8 8 8 8 8 8 8 10 8 15 11 13 9 9 9 8 10 10 8 8 11 13 10 10 10 10 10 10 10 10 9 9 9 9 9 9 11 10 9 9 8 8 8 9 8 8 10 10 8 8 8 8 8 8 8 11 10 10 10 10 8 7 7 7 10 8 11 11 11 11 13 11 12 21 16 13 6 6 6 6 8 8 10 10 10 10 6 6 6 8 8 10 8 8 8	Open. Hide. 7 7 7 7 6 6 6 10 8 8 8 8 8 10 3 0 3 22 22 27 31 36 30 37 29 29 29 29 35 30 34 41 27 24 19 13 8 8 8 8 8 8 10 13 20 24 30 28 29 30 29 35 35 37 37 37 37 37 37 59 59 29 23 9 11 8 8 8 8 8 10 16 39 31 27 30 33 33 33 33 33 35 35 36 36 36 36 53 53 53 53 50 50 43 47 57 57 57 57 57 59 54 54 54 68 54 54 57 54 54 54 54 57 54 57 57 57 57 57 40 40 21 21 24 38 42 47 57 57 57 57 48 48 57 57 43 42 43 47 47 57 57 48 48 48 57 57 48 48 48 57 44 57 43 43 44 50 50 57 43 43 46 50 50 43 43 37 43 43 44 43 52 52 57 57 52 52 52 52 52 52 57 59 59 59 59 54 54 57 43 43 43 43 28 35 35 43 43 37 37 43 43 43 32 35 35 42 30 35 37 32 25 24 23 24 18 18 14 18 24 32 19 32 27 27 35 35 35 43 32 36 35 43 43 33 33 33 33 33 42 42 42 43 43 59 32 32 20 20 15 21 11 8 8 8 11 14 28 30 30 37 32 43 43 44 40 28 19 13 12 12 24 24 43 24 24 24 28 40 39 46 46 46 47 40 47 28 25 20 20 20 23 28 18 13 13 18 26 34 43 46 48 28 28 19 12 12 25 25 26 17 17 21 25 18 23 23 16 16 11 10 21 21 30 21 30 26 23 30 18 28 19 24 14 19 24 33 33 39 34 28 23 13 9 9 9 9 9 9 9 9 10 16 12 12 12 12 12 11 15 10 8 8 8 8 10 10 10 8 9 9 17 16 16 16 12 11 11 12 12 22 23 18 18 18 11 12 11 8 8 8 8 8 8 11 10 9 10 10 10 10 11 12 10 10 10 10 13 13 10 8 6 6 6 8 10 14 13 13 10 10 9 8 8 8 8 8 10 13 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 9 9 10 12 15 8 8 8 10 14 15 15 12 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 12 13 12 6 6 8 8 8 10 9 9 11 9 10 9 8 8 8 8 8 8 9 10 9 8 8 6 6 8 8 8 8 7 7 6 8 10 10 10 12 9 8 6 6 6 8 8 10 12 15 16 19 13 11 11 11 11 19 19 14 13 15 10 10 10 10 10 9 10 13 17 15 9 9 8 13 8 8 9 9 8 10 9 8 8 8 8 8 8 8 8 11 11 10 10 6 6 8 10 15 10 10 10 12 9 10 11 12 12 12 9 9 12 14 11 12 14 13 16 15 15 11 10 10 8 6 6 6 6 8 8 8 8 10 19 8 9 9 13 13 12 12 10 8 8 8 9 11 11 11 20 15 15 15 18 15 11 10 10 10 10 10 10 8 10 6 6 6 13 12 12 10 14 8 10 9 11 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 17 11 8 8 8 10 8 13 8 8 8 8 8 10 10 10 8 12 8 8 8 8 8 8 8 8 22 15 28 28 18 16 19 9 9 9 8 9 9 9 12 14 28 28 30 24 17 15 10 10 10 10 6 6 6 10 11 6 6 6 6 12 13 9 7 10 6 6 8 7 7 12 12 13 16 14 14 9 11 10 9 9 9 10 10 9 9 9 9 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no475_p07.g1 MSMg01no475_p07.g1 CHROMAT_FILE:
MSMg01no475_p07.g1 PHD_FILE: MSMg01no475_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:54 2005
         (229 letters)



>mm_chr14_61283277_61283900
          Length = 624

 Score =  393 bits (203), Expect = e-114
 Identities = 221/229 (96%), Gaps = 5/229 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaccaagtcaactctgggggagggggaagtgctctctgagatcctgcagggagccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caggaccaagtcaactctgggggagggggaagtgctctctgagatcctgcagggagccca 365

                                                                       
Query: 61  ctgtgctgttactagttaacatccaggtttgtataaaccaacttttaaattctgtctgag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgtgctgttactagttaacttccaggtttgtataaaccaacttttaaattctgtctgag 305

                                                                       
Query: 121 gagcacagaatggtgggcagggaatcattaatctgcagagtggcctaatcctgtggtgac 180
           |||  |||   ||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 304 gag--cag---ggtgggcagggaatcattaatctgcagagtggcctaagcctggggtgac 250

                                                            
Query: 181 cacatctgggaacacaacacaccatcctagctccccagctactttgtct 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacatctgggaacacaacacaccatcctagctccccagctactttgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 624
Length adjustment: 9
Effective length of query: 220
Effective length of database: 615
Effective search space:   135300
Effective search space used:   135300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information