BAC Information

Click to search

BAC

Clone NameMSMg01-476G07
Chromosome14 (Build37)
Map Location 105,990,504 - 106,120,245
singlet/doubletdoublet
Overlap geneLOC620376
Upstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
Downstream geneLOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476G07.T7 (MSMg01no476_g07.b1)MSMg01-476G07.TJ (MSMg01no476_g07.g1)
ACCAG557996AG557997
length784798
length of high quality
(start - end)
245 (71 - 315)172 (79 - 250)
definitionCHROMAT_FILE: MSMg01no476_g07.b1 PHD_FILE: MSMg01no476_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:29 2005CHROMAT_FILE: MSMg01no476_g07.g1 PHD_FILE: MSMg01no476_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,120,001 - 106,120,245)(105,990,504 - 105,990,675)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAAAGAGGATCCGCGGA
ATTCCTGGGTTTTCTAATCTCTATGTCTGGCACTAGACTCTGTTTATACT
GGTTTGATTAAAGCAGTGTTTTAAGGTTGGCTCTCCTATGATCTGTGAGA
TCCTAAGATGGAGACAAATGACCCACAATGCAATTCAGCTCTGCAAAGTG
TTACGCAGTGTTAGAGAGACTAATCCAGGAGCAGCAGAGATATTCCCAGT
TAATAAGAGAGAGGATTTACTCTGTTGTCTCAGTGGGAAGATAGAAACTG
AACAATCAAGATGCAAATATTTTTTTTTGTGAGGAGAGAAGATAGCAGTG
TCTGAAAACTCATCGCACCACAACACCAAGTTTGTAACTACTAAGCGTCT
TAAACATTGTTCTTATAGAACATAAATATTCAAAATCATTTTCTAGATTT
TCGAAATTATTATTCATATGCCTTTAGAACTTTCCAAAATACATTCATTC
CTTCCATCATTCATCCATTCCTGTGCTGCTACGAATGTGTTACTCCTACC
ATGCCTTTGTTTGACCTTTACCTGTTTTTCCCCTTCTCTCTTCTTTCTTT
TCCGCTTCCCTTCCTTTCCTAGTTCCTTTCCTCCTTTCGCTTCCTTCCTT
TTCTTTCCTTTCTTTTTCCCCTTCCTTTTTCCTCTCTCTTTTTTTCCCTT
TACCCCTTTCCTTATCTCTTTTTATTTACTCCTTCTCTCCTCTTTTCTAC
CCTTCCTCCTTTCTCTTCCTCTCCCCTCCTTTCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTATCTGCCGCAATTCACCTTTCACATGTTTCTGCACTG
TTATTCTAGTCCCTATGATTGGCTGCACCCGTCTCCACCCTTAGCAGAGC
AGACAGAGGGCACAGTAAGGAAATGTCAAAAGGCAGAAACCGAATGACCT
ACAGGGATGTTTCTATCAATTTGGAGATACTGGCTGGAGCCTGTATGTAT
GATTTTTACGCTGGCTTGAGTTTTCCCGAAGCCAGCTCCACAGCTGCCCT
TCACGATTATGGTAGACTTTTGGTACTTTCACTGAGGGCCTTAAGCACAG
ACTGTGTTGTAGTTAACGCACCGAACCTCGCGGTTTTTTTTTTATATCCA
TTTGTCACTCCTCAGGTAAAACTGTCTTAGTCTTTTCTTCTTGACTCACT
GTTCACCGTTTTCCAGCACTTCCACTTCTATTTATATTTCTCCGTTTTTT
TTTCTCTCTTCTCCACCTTTTTTTTTTCTCCCTCTCCCTTTTCTCTTTTT
CCCCCTTTTTTTTCGTCTATCCACCTCTTGCTCATCTTTTTTTTTTCCTC
CCTTTCCCCCTTTTCCCCCTCTTCCCTTTTTTTTTTCCCCACTTTTTTTT
TTCCTCCTTCTTACCCACCCTTTTCTCTTCTCCTCTTTCCTCCCTCCACC
CCCTTTTCTCCTCCCCTCCCCCCCCATTTTCTTTTTTATTTTATTCTCTC
TCCTCCGCTTGCGCTCCCCTCCCTTTCAACCCTCTTTCTCCTCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_g07.b1 MSMg01no476_g07.b1 CHROMAT_FILE:
MSMg01no476_g07.b1 PHD_FILE: MSMg01no476_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:29 2005
         (245 letters)



>mm_chr14_106119801_106120445
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgtctggcactagactctgtttatactggtttgattaaagcagtgttttaaggttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatgtctggcactagactctgtttatactggtttgattaaagcagtgttttaaggttgg 386

                                                                       
Query: 61  ctctcctatgatctgtgagatcctaagatggagacaaatgacccacaatgcaattcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctcctatgatctgtgagatcctaagatggagacaaatgacccacaatgcaattcagct 326

                                                                       
Query: 121 ctgcaaagtgttacgcagtgttagagagactaatccaggagcagcagagatattcccagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgcaaagtgttacgcagtgttagagagactaacccaggagcagcagagatattcccagt 266

                                                                       
Query: 181 taataagagagaggatttactctgttgtctcagtgggaagatagaaactgaacaatcaag 240
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 taagaagagagaggatttactctgtcgtctcagtgggaagatagaaactgaacaatcaag 206

                
Query: 241 atgca 245
           |||||
Sbjct: 205 atgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_g07.g1 MSMg01no476_g07.g1 CHROMAT_FILE:
MSMg01no476_g07.g1 PHD_FILE: MSMg01no476_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:29 2005
         (172 letters)



>mm_chr14_105990304_105990875
          Length = 572

 Score =  302 bits (156), Expect = 9e-87
 Identities = 168/172 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttcacatgtttctgcactgttattctagtccctatgattggctgcacccgtctccac 60
           ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||
Sbjct: 201 cctttcacatgtttctgcactgttattctagtccctacgagcggctgcacccgtctccac 260

                                                                       
Query: 61  ccttagcagagcagacagagggcacagtaaggaaatgtcaaaaggcagaaaccgaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttagcagagcagacagagggcacagtaaggaaatgtcaaaaggcagaaaccgaatgac 320

                                                               
Query: 121 ctacagggatgtttctatcaatttggagatactggctggagcctgtatgtat 172
           |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaggggtgtttctatcaatttggagatactggctggagcctgtatgtat 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)