Query= MSMg01no477_d16.b1 MSMg01no477_d16.b1 CHROMAT_FILE:
MSMg01no477_d16.b1 PHD_FILE: MSMg01no477_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(599 letters)
>mm_chr14_72615816_72616815
Length = 1000
Score = 1038 bits (537), Expect = 0.0
Identities = 576/597 (96%), Gaps = 14/597 (2%)
Strand = Plus / Minus
Query: 4 gaattctggggccttgcacctgatagacaagtgccttatcactgggctatcctgttcatg 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gaatcctggggccttgcacctgatagacaagtgccttatcactgggctatcctgttcatg 876
Query: 64 caaggtagaaaggacagcgctaacatgagaacttgaaactacagagttgaaaagccatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 caaggtagaaaggacagcgctaacatgagaacttgaaactacagagttgaaaagccatct 816
Query: 124 gagatccattaaagcaagataaggctgatgaaaatgaggccagaagatagtgagcagtgg 183
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 815 gagatccattaaagc-------------tgaaaatgaggccagaagatagtgagcagtgg 769
Query: 184 tttaactacttggcttggtctgttatttttcaatttatatggacattagtatctcattaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tttaactacttggcttggtctgttatttttcaatttatatggacattagtatctcattaa 709
Query: 244 caca-tttttcctctaaatgatcatatttttattaaactaaaatacaaaattcttatctg 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cacattttttcctctaaatgatcatatttttattaaactaaaatacaaaattcttatctg 649
Query: 303 ctgaagccgttggctgggctattaattatcctattttgcttgttataaaagccgaagcct 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 648 ctgaagccgttggctgggctattaattatcctattttgcttgttataaaagccgaagctt 589
Query: 363 gttttgtgactgacctctgtttacccctccttcctccttccacccctgcaatgcagctgt 422
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 588 gttttgtgactgacctctgtttacccctccttcctccttccacccccgcaatgcagctgt 529
Query: 423 aatcgttttcattcacagcaaataaaagatgattgtgcatgtggtggattatgggtttca 482
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 528 aatcgtttacattcacagcaaataaaagatgactctgcatgtggtggattatgggtttca 469
Query: 483 tggactcaatgacatttgaggttttgactttactgattgacctaatgccattggaacaaa 542
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 468 tggactcaatgacatttgaggttttgactttactgagtgacctaatgccattggaacaaa 409
Query: 543 atggagtcaagtaggactgttccacaattcctgaagttcaaaaggtatcttgcatcc 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atggagtcaagtaggactgttccacaattcctgaagttcaaaaggtatcttgcatcc 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_d16.g1 MSMg01no477_d16.g1 CHROMAT_FILE:
MSMg01no477_d16.g1 PHD_FILE: MSMg01no477_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(619 letters)
>mm_chr14_72460138_72461156
Length = 1019
Score = 986 bits (510), Expect = 0.0
Identities = 591/626 (94%), Gaps = 17/626 (2%)
Strand = Plus / Plus
Query: 1 ctgggtcttggaggagaccttacaactaccacttt----actaacataaccccaatttca 56
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ctgggtcttggaggtgaccttacaactaccactttactaactaacataaccccaatttca 263
Query: 57 tcctgtatatttgttcttattcgaacaaatagacatagttctcacctatcatcaaggaga 116
|||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tcctgtatatttgtccttagaccaacaaatagacatagttctcacccatcatcaaggaga 323
Query: 117 cacctctttgccaaagaagaagaccattgcaataaagcacaactgatcaaaatgcaaaat 176
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacctctttgcca---aagaagaccattgcaataaagcacaactgatcaaaatgcaaaat 380
Query: 177 tatggagcccagtcccaactgatacatctacagaacaactcctgcacctaagtgtagaga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatggagcccagtcccaactgatacatctacagaacaactcctgcacctaagtgtagaga 440
Query: 237 gaatcttttttgttctgtatggaagcatcatctgtcaataataa---ttaaaaaaaacca 293
||||||||| || ||||||||||||||||||||||||| |||| |||||| |
Sbjct: 441 gaatcttttatgcactgtatggaagcatcatctgtcaat-ataatttttaaaa------a 493
Query: 294 aaaagctgttctattagcttacccaggaactaggacgtgggaggtgcagcatggagagag 353
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 494 aaaagcttttctattagcttacccaggaactaggacatgggaggtccagcatggagagag 553
Query: 354 aattatgggatagtcaagtgctagaaaaggtttgtcaggaacattaatggagatggttgt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aattatgggatagtcaagtgctagaaaaggtttgtcaggaacattaatggagatggttgt 613
Query: 414 ataaaccttgagaagaggtaactagccatgcacattcatagaatagaataagtgggataa 473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 614 ataaaccttgagaagaggtaactagccatgcacattcatagaataaaataagtgggataa 673
Query: 474 tcgagttacaaactagcaagaacaaggcaaagcttttggcctagacatttatttataaat 533
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcgagttacaaactagtaagaacaaggcaaagcttttggcctagacatttatttataaat 733
Query: 534 aactcagtcttggagtcattatttcgggaacttgggtacaggtggaaatccgggcagtta 593
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 734 aactcagtcttggagtcattatttcgggaacttgggtacaggtggaaattcgggcagtta 793
Query: 594 tatctaagactcagtgaccagcttag 619
||||||| ||||||||| || |||||
Sbjct: 794 tatctaaaactcagtgatcaccttag 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
