Query= MSMg01no478_i21.b1 MSMg01no478_i21.b1 CHROMAT_FILE:
MSMg01no478_i21.b1 PHD_FILE: MSMg01no478_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:18 2005
(406 letters)
>mm_chr14_31770603_31771408
Length = 806
Score = 667 bits (345), Expect = 0.0
Identities = 394/413 (95%), Gaps = 11/413 (2%)
Strand = Plus / Plus
Query: 1 aggatcttttttgtgggaaaggttgaagttgttaagatgtaaggctgtctgggtgcctga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aggatctcttttgtgggaaaggttgaagttgttaagatgtaaggctgtctgggtgcctga 257
Query: 61 atagtgcatagtagagtgagctgtttacagtgagtccatgctgtagaatgtgctgcttgg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atagcgcatagtagagtgagctgtttacagtgagtccatgctgtagaatgtgctgcttgg 317
Query: 121 atgcagatgccagaa--atactaacat-c-g-tgt--gattttcctgacactggttgccc 173
||||||| | | | ||| || || | | || |||||||||||||||||||||||
Sbjct: 318 atgcagaag---gtatcata-tatgatgcagatgccagattttcctgacactggttgccc 373
Query: 174 tttgcagtgacttaaagattaccccaagactcactgaaaaacattttttaaagtaaataa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttgcagtgacttaaagattaccccaagactcactgaaaaacattttttaaagtaaataa 433
Query: 234 gtaaaaatgtgcagttataggggctgaagggatggcttattgtttaagaacgctactggt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtaaaaatgtgcagttataggggctgaagggatggcttattgtttaagaacgctactggt 493
Query: 294 cacccactctgtctgctttccaccttctgttcctagagtgactgatgccctctttcagcc 353
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacccactctgtctgctctccaccttctgttcctagagtgactgatgccctctttcagcc 553
Query: 354 tctgctgacgctatgcttgtggtacatttacatgcaaacaaaactcccatacg 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctgctgacgctatgcttgtggtacatttacatgcaaacaaaactcccatacg 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_i21.g1 MSMg01no478_i21.g1 CHROMAT_FILE:
MSMg01no478_i21.g1 PHD_FILE: MSMg01no478_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:18 2005
(639 letters)
>mm_chr14_31938158_31939195
Length = 1038
Score = 1212 bits (627), Expect = 0.0
Identities = 636/639 (99%), Gaps = 1/639 (0%)
Strand = Plus / Minus
Query: 1 ttggattcaatctgctgagaaaaagtggggggtaggggtcgggggaggctgtgggggact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 838 ttggattcaatctgctgagaaaaagtggggggtaggggtcgggggaggctgtggggaact 779
Query: 61 gtgagactacaccttcacaagccccagtgcccagtgggatcaaccataaaaattagagtt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gtgagactccaccttcacaagccccagtgcccagtgggatcaaccataaaaattagagtt 719
Query: 121 ctttacagtggcctttctctatgaagggagtgttgtcattcagggctgaggaaactcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctttacagtggcctttctctatgaagggagtgttgtcattcagggctgaggaaactcttg 659
Query: 181 cagccatgttaacagagccagttagagttgcctcaggcaacatgaattgagaagtgaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cagccatgttaacagagccagttagagttgcctcaggcaacatgaattgagaagtgaggc 599
Query: 241 agttggtagcaatctctggttggagtcttagaggggggccaaggagttaaggtagtaagt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agttgg-agcaatctctggttggagtcttagaggggggccaaggagttaaggtagtaagt 540
Query: 301 agagtgtgaagtaacttcttcagctgttttggcacaagagagggaagagaaaagccaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agagtgtgaagtaacttcttcagctgttttggcacaagagagggaagagaaaagccaaag 480
Query: 361 ggccagaggaagggagtaaactccaaggccaggaaagccaggactggaaaagcagttgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggccagaggaagggagtaaactccaaggccaggaaagccaggactggaaaagcagttgtc 420
Query: 421 atcggagcagcattcttccctcggaacactgtaaccggagacataagggaggccaagggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atcggagcagcattcttccctcggaacactgtaaccggagacataagggaggccaagggg 360
Query: 481 ttggtccttcacccctaagaatatgggtggcaaaaaaggcacagaaaccatcacaggcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttggtccttcacccctaagaatatgggtggcaaaaaaggcacagaaaccatcacaggcaa 300
Query: 541 gaaacctgagctggcagtcggtggtaaaatccctgagaggatgaccatcaaatgaaccct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaacctgagctggcagtcggtggtaaaatccctgagaggatgaccatcaaatgaaccct 240
Query: 601 gaaataagaggatttgtttttttaaagaaaggaagatgt 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gaaataagaggatttgtttttttaaagaaaggaagatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
