BAC Information

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BAC

Clone NameMSMg01-478J07
Chromosome14 (Build37)
Map Location 69,147,573 - 69,324,957
singlet/doubletdoublet
Overlap geneAdam7, Adamdec1, Adam28, LOC641033
Upstream geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneLOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478J07.T7 (MSMg01no478_j07.b1)MSMg01-478J07.TJ (MSMg01no478_j07.g1)
ACCAG559663AG559664
length739736
length of high quality
(start - end)
697 (41 - 737)670 (67 - 736)
definitionCHROMAT_FILE: MSMg01no478_j07.b1 PHD_FILE: MSMg01no478_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:20 2005CHROMAT_FILE: MSMg01no478_j07.g1 PHD_FILE: MSMg01no478_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,324,451 - 69,324,957)(69,147,573 - 69,148,242)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCTATCTCCTCAAAATCAGGCTCAAGAGGCATAACAAACTTGAAATCAA
CTAGAAGTTCTAGATTGGAAAGAAATGTTAATAGAATGTCAATAGAAATA
TTAGAGCCATAGAGGAGGACATAAGTGTATTTATTACCACTTCCAAAAGG
AATCTTCTCTTACATCAACCCAATCTCCCATTATTTGACATTTTGGAGAA
GTTCAAAGCACTGCTTTGGTAGAACATCAAATAATTATCTTATCGATCAT
ATGTTTGTGTGGTTTAAGGAATAATGTAAGTTAATATGATGAATCTATAA
ATACCTTAAAGTTATTAAGCAAGCTAACAGGCAACTTATTAAATAATGTA
TGTTGTCATTTCTGCATAGATAACACCTTTATAACAGTACAAAATATGTG
AATCTATAATTTTCATAGGATGAAATATTGGCAGATTGTCAAACATGATG
AAAAGATCTATGGTATAAAAAATGTATACATGATCTGTAAATTGTAATAG
ACATACATTATTTCTATTTTATTTACTTCAAAAGCTCACTAGTTTATTAA
TAAAAAAAAAGACAAAAATTTGCTCCTTGGTCAGTTCTCTGTCTTTAAAA
TTACTAGGTTTTGAAATAATTATAAAGTTTGGAAATAGAAAACTTCTCAT
CTTGANTAATTAATAAGCTTACAGTATATTTAGACACAN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCTCGAGAAATTCACATTACTGGCAGTCTGTACAAAACCATGAGT
AGCATATGCACCTAACCCTATAAGATAGGCAACCATAATAGAACTTACCT
TGATCTTAGCTGGGCATGGTGGTGGACACCTGTAATCCTAGCACTAGGGA
GGCAGAGGCAGGGGGATACGAAGTTCAAGGTCATCCTCCTCTACATAGTG
GATTTGAGTAGAGTTTGGGTTACAGGAGACCCTGTTGAAACAAAGCAAAA
CAAGCCATATTTTTTACCTTGCTTTCAGAAGGTGAAGGATTAAAGTTTTT
TTGCCCAATTTTATTTCATACAACAATTCTTCTTCATATTCCTCCTGAAA
AACAAGAATGTCTCTGTGAATTCCACATATATTTATTGGAAAGGAATGTC
TTGAGGAAGGGGCATATTATCCACCTATAGCTCCCCACAGTAAGTTCAGG
GAGGAAACCTTGACAAAGGTGAACTTAAGAGAGACAGAACTATAAGGATG
GTTTTACCAATCATATCTCAGTTAAAAAGACATTTCTACTGATGAAATCA
AATGGATAATATATATTTGCCTCTCAATCAGGAATGTATGAGCCACTTCA
CATTCACTTATACCTTTATCAAACCCTCAGTTCTTCCTTTTTTGTGTTTT
AAAAAAGTTTTGCATATAGACTCCATTTTCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_j07.b1 MSMg01no478_j07.b1 CHROMAT_FILE:
MSMg01no478_j07.b1 PHD_FILE: MSMg01no478_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
         (697 letters)



>mm_chr14_69324451_69325547
          Length = 1097

 Score =  919 bits (475), Expect = 0.0
 Identities = 499/507 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctatctcctcaaaatcaggctcaagaggcataacaaacttgaaatcaacta 63
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaattctcctacctattcaaaatcaggctcaagaggcataacaaacttgaaatcaacta 448

                                                                       
Query: 64  gaagttctagattggaaagaaatgttaatagaatgtcaatagaaatattagagccataga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaagttctagattggaaagaaatgttaatagaatgtcaatagaaatattagagccataga 388

                                                                       
Query: 124 ggaggacataagtgtatttattaccacttccaaaaggaatcttctcttacatcaacccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaggacataagtgtatttattaccacttccaaaaggaatcttctcttacatcaacccaa 328

                                                                       
Query: 184 tctcccattatttgacattttggagaagttcaaagcactgctttggtagaacatcaaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctcccattatttgacattttggagaagttcaaagcactgctttggtagaacatcaaata 268

                                                                       
Query: 244 attatcttatcgatcatatgtttgtgtggtttaaggaataatgtaagttaatatgatgaa 303
           |||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 267 attatcttattgatcatatgtttgtgtggcccaaggaataatgtaagttaatatgatgaa 208

                                                                       
Query: 304 tctataaataccttaaagttattaagcaagctaacaggcaacttattaaataatgtatgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tctataaataccttaaagttattaagcaagctaacaggcaacttattaaataatgtatgt 148

                                                                       
Query: 364 tgtcatttctgcatagataacacctttataacagtacaaaatatgtgaatctataatttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgtcatttctgcatagataacacctttataacagtacaaaatatgtgaatctataatttt 88

                                                                       
Query: 424 cataggatgaaatattggcagattgtcaaacatgatgaaaagatctatggtataaaaaat 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  cacaggatgaaatattggcagattgtcaaacatgatgaaaagatctatggtataaaaaat 28

                                      
Query: 484 gtatacatgatctgtaaattgtaatag 510
           |||||||||||||||||||||||||||
Sbjct: 27  gtatacatgatctgtaaattgtaatag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no478_j07.g1 MSMg01no478_j07.g1 CHROMAT_FILE:
MSMg01no478_j07.g1 PHD_FILE: MSMg01no478_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
         (670 letters)



>mm_chr14_69147373_69148442
          Length = 1070

 Score = 1257 bits (650), Expect = 0.0
 Identities = 665/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacattactggcagtctgtacaaaaccatgagtagcatatgcacctaaccctataagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacattactggcagtctgtacaaaaccatgagtagcatatgcacctaaccctataagat 260

                                                                       
Query: 61  aggcaaccataatagaacttaccttgatcttagctgggcatggtggtggacacctgtaat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aggcaaccataatagaacttaccttgatcttagctgggcattgtggtggacacctgtaat 320

                                                                       
Query: 121 cctagcactagggaggcagaggcagggggatacgaagttcaaggtcatcctcctctacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagcactagggaggcagaggcagggggatacgaagttcaaggtcatcctcctctacat 380

                                                                       
Query: 181 agtggatttgagtagagtttgggttacaggagaccctgttgaaacaaagcaaaacaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggatttgagtagagtttgggttacaggagaccctgttgaaacaaagcaaaacaagcc 440

                                                                       
Query: 241 atattttttaccttgctttcagaaggtgaaggattaaagtttttttgcccaattttattt 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacactttaccttgctttcagaaggtgaaggattaaagtttttttgcccaattttattt 500

                                                                       
Query: 301 catacaacaattcttcttcatattcctcctgaaaaacaagaatgtctctgtgaattccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catacaacaattcttcttcatattcctcctgaaaaacaagaatgtctctgtgaattccac 560

                                                                       
Query: 361 atatatttattggaaaggaatgtcttgaggaaggggcatattatccacctatagctcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 atatatttattggaaaggaatgtcttgaggaaggggcatattatccacctacagctcccc 620

                                                                       
Query: 421 acagtaagttcagggaggaaaccttgacaaaggtgaacttaagagagacagaactataag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagtaagttcagggaggaaaccttgacaaaggtgaacttaagagagacagaactataag 680

                                                                       
Query: 481 gatggttttaccaatcatatctcagttaaaaagacatttctactgatgaaatcaaatgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatggttttaccaatcatatctcagttaaaaagacatttctactgatgaaatcaaatgga 740

                                                                       
Query: 541 taatatatatttgcctctcaatcaggaatgtatgagccacttcacattcacttatacctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatatatatttgcctctcaatcaggaatgtatgagccacttcacattcacttatacctt 800

                                                                       
Query: 601 tatcaaaccctcagttcttccttttttgtgttttaaaaaagttttgcatatagactccat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatcaaaccctcagttcttccttttttgtgttttaaaaaagttttgcatatagactccat 860

                     
Query: 661 tttcttcctc 670
           ||||||||||
Sbjct: 861 tttcttcctc 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)