BAC Information

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BAC

Clone NameMSMg01-479J16
Chromosome14 (Build37)
Map Location 40,842,023 - 40,842,603
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3, LOC100040439
Downstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479J16.T7 (MSMg01no479_j16.b1)MSMg01-479J16.TJ (MSMg01no479_j16.g1)
ACCAG560444AG560445
length757749
length of high quality
(start - end)
572 (67 - 638)584 (73 - 656)
definitionCHROMAT_FILE: MSMg01no479_j16.b1 PHD_FILE: MSMg01no479_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:40 2005CHROMAT_FILE: MSMg01no479_j16.g1 PHD_FILE: MSMg01no479_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGATTGCCTTTAAATTCTTTTTTTTTAAATTGGGTATATTCCT
CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCAA
CCCCCTACCCACCAACTCCCACTTTTTGGCCCTGGCGATCCCCTGTACTG
GGGCATATAAAGTTTGCAAGTCCAATGGGCTTCTCTTTCCAGTGATGGCC
GACTAGGCCATCTTTTGATACATATGCAGCTAGATTCAAGAGCTCCGGGG
TACTGCTTAGTTCATAATGTTGTTCCCCCTATAGGGTTGCAGATCCCTTT
AGCTCCTTGGGTATTTTCTCTAGCTCCTCCATTGAGGGCCCTGTCATCAT
CCAATAGCTGACTGTGAGCAACCACATATGTGTTTGCTAGGCCCCAGGGT
AGTCTCACTAGAGACAGCTATATCAGGGTCCTATCAGCACAATCTTGCTA
GTGTATGCAATGGTGTCAGCCTTTGGAGGCTGATTATGTGATGGATCCCT
GGATATGGCAGTCTCTAGATGGTCTATACTTTTGTCTCAGCTCCAAACTT
TGTCTCTGTAACTCCTTCCATGGGCGTTTTGTTCCCAACTCTAAGAAAGG
GCAAAGTGTCCACACTTTGGTCTTCATTCTTCTTCAGTTTCATGTGTTTT
GCAAATTGTAACTTATATCTTGGGTATGCTAAGTTTCTGGGCTAATATCC
ACTTATC
GCAATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTAATTCTTGAATAGACTGTGAAACA
CTTCAGAGTGCCTGTTAGCATAGGTGACTGAGGACCAGTGCCTTTTAACA
ATAATTGTTGACCATGTTCAGCCATAAGATGAGATAGTTTTAAATAAAGT
GATCCATCAAGTCATCTTTTAGATTTGTGAAAGTTCTTCACCATACTGAG
AAAATTTGAAGATGTGGAGTCAGAGGATGGGAGCAGCTAACATAATTCCT
CAAACATTTTATATTCTTGTGCTATCAGACTGTCAACTCTAGGCTTTATT
TAAGTAGTCGAGAGGTATAACAGGCTTCTGTCAGCAAGCACTTGATGGCA
TCCACAATAGCGTCTGGGCTGAGGGACAGTATATGGGATGGATCCCCAGG
TGGGGCAGTCTCTGGATGGTCACTCCTTCAGTCTCTGCAACACACTTTGT
CTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCCTTCTAAGAAGGACCA
AAGTATCCACACTTTGGTCTTCCTTATTCTTGAGTTTCATGTGATTTGTG
AATTGAATCTTGAGTATTCCGAGCTTCTGGACTAATATCCACTTATCAGT
GAGTGTACACAATGTATGTTCTTTTGAACTAGCCAGTACCTCCAGAGTTC
CCAGGGACTAAACCACCAACCAAAGTGTATACATGGTGGGTCTCATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_j16.g1 MSMg01no479_j16.g1 CHROMAT_FILE:
MSMg01no479_j16.g1 PHD_FILE: MSMg01no479_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:40 2005
         (584 letters)



>mm_chr14_40841823_40842806
          Length = 984

 Score = 1054 bits (545), Expect = 0.0
 Identities = 572/581 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaattcttgaatagactgtgaaacacttcagagtgcctgttagcataggtgactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaattcttgaatagactgtgaaacacttcagagtgcctgttagcataggtgactgag 260

                                                                       
Query: 61  gaccagtgccttttaacaataattgttgaccatgttcagccataagatgagatagtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccagtgccttttaacaataattgttgaccatgttcagccataagatgagatagtttta 320

                                                                       
Query: 121 aataaagtgatccatcaagtcatcttttagatttgtgaaagttcttcaccatactgagaa 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aataaagtgatccatcaagtcatcttttagatttgtgaaatttcttcaccatactgagaa 380

                                                                       
Query: 181 aatttgaagatgtggagtcagaggatgggagcagctaacataattcctcaaacattttat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 381 aatttgaagatgtggagtcagaggatgggagcagctgacataattcctcaaacattttaa 440

                                                                       
Query: 241 attcttgtgctatcagactgtcaactctaggctttatttaagtagtcgagaggtataaca 300
           | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 441 agtcttgtgctatcagaatgtcaactctaggctttatttaagtagtcaagaggaataaca 500

                                                                       
Query: 301 ggcttctgtcagcaagcacttgatggcatccacaatagcgtctgggctgagggacagtat 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ggcttctgtcagcaagcacttgatggcatccacaatagtgtctgggctgagggacagtat 560

                                                                       
Query: 361 atgggatggatccccaggtggggcagtctctggatggtcactccttcagtctctgcaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgggatggatccccaggtggggcagtctctggatggtcactccttcagtctctgcaaca 620

                                                                       
Query: 421 cactttgtctctgtaactccttccatgggtattttgttcccccttctaagaaggaccaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cactttgtctctgtaactccttccatgggtattttgttcccccttctaagaaggacgaaa 680

                                                                       
Query: 481 gtatccacactttggtcttccttattcttgagtttcatgtgatttgtgaattgaatcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatccacactttggtcttccttattcttgagtttcatgtgatttgtgaattgaatcttg 740

                                                    
Query: 541 agtattccgagcttctggactaatatccacttatcagtgag 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtattccgagcttctggactaatatccacttatcagtgag 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)