Query= MSMg01no479_k12.b1 MSMg01no479_k12.b1 CHROMAT_FILE:
MSMg01no479_k12.b1 PHD_FILE: MSMg01no479_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:44 2005
(319 letters)
>mm_chr14_105430323_105431043
Length = 721
Score = 598 bits (309), Expect = e-175
Identities = 318/321 (99%), Gaps = 2/321 (0%)
Strand = Plus / Plus
Query: 1 ctattttttt-ataaaaagtgtgctatttaaattcacactcataaatatgtagctaatat 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttttttaataaaaagtgtgctatttaaattcacactcataaatatgtagctaatat 260
Query: 60 tgactaatgggaaccctaaaaggaagagagctaaggttttttaaggcaaatccattgaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactaatgggaaccctaaaaggaagagagctaaggttttttaaggcaaatccattgaaa 320
Query: 120 ttaaggtcatctgcaagaaatttgtttaaatttttttctgagccacatccaaaactccag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaggtcatctgcaagaaatttgtttaaatttttttctgagccacatccaaaactccag 380
Query: 180 agggcatgttaaataataaaagtgtaaactattgggatctggtgctggttggtatattgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcatgttaaataataaaagtgtaaactattgggatctggtgctggttggtatattgg 440
Query: 240 cacagtacatagatccctgtgtggagaaaaggaaaaaaaaaa-cctaaaatttctcttct 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 aacagtacatagatccctgtgtggagaaaaggaaaaaaaaaaacctaaaatttctcttct 500
Query: 299 ttctttatctagaaacctcca 319
|||||||||||||||||||||
Sbjct: 501 ttctttatctagaaacctcca 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 721
Length adjustment: 9
Effective length of query: 310
Effective length of database: 712
Effective search space: 220720
Effective search space used: 220720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_k12.g1 MSMg01no479_k12.g1 CHROMAT_FILE:
MSMg01no479_k12.g1 PHD_FILE: MSMg01no479_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:44 2005
(621 letters)
>mm_chr14_105629630_105630650
Length = 1021
Score = 988 bits (511), Expect = 0.0
Identities = 593/645 (91%), Gaps = 44/645 (6%)
Strand = Plus / Minus
Query: 1 tccaccataccactctcaccatggtggtctgtatgccctcagaccaaagatcaaggtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tccaccataccactctcaccatggtggtctgtatgccctcagaccaaagatcaaggtaaa 879
Query: 61 ttcttccatacatctcttccgaggtatggggccacagcagtaagtaactgatatcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttcttccatacatctcttccgaggtatggggccacagcagtaagtaactgatatcacaaa 819
Query: 121 agcagtagtgataatgcacaaaagcagtctggaagggagagcatacggggaatggttctc 180
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 818 agcagtagtgataatacacaaaaacagtctggaagggagagcatacggggaatggttctc 759
Query: 181 tacaacactgattcctgaactatggttccccagacaagcgtcacgtaacaatgtgctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tacaacactgattcctgaactatggttccccagacaagcgtcacgtaacaatgtgctgct 699
Query: 241 gg------ttttttaaactctcttgccttgcttaccga-------gcaagcttc------ 281
|| |||| ||||||||||||||||||| || ||||||
Sbjct: 698 ggcagggc------aaacactcttgccttgcttaccgagtgagctgcgagcttcgaactg 645
Query: 282 -gagctacagacttggagctttcccaggcctgctgggagattctgattctgatacatgct 340
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 644 tgagctgcagacttggagctttcccaggcctgctgggagattccgattctgatacatgct 585
Query: 341 gcagtaggagagtgtctttctcacatatcagctacagcttcagagtaactctgagggctg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gcagtaggagagtgtctttctcacatatcagctacagcttcagagtaactctgagggctg 525
Query: 401 atctctgcctccattattataggccaaaaggttatatatatttagagagagagagagaga 460
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 atctctgcctccattattataggccaaaaggttatatatattt--------------aga 479
Query: 461 gagagagagagagagaactaaagtctttatgttgtatttagaccttagagatcaaacaca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gagagagagagagagaactaaagtctttatgttgtatttagaccttagagatcaaacaca 419
Query: 521 aacatttttgtt---aaaaacaaaaacaccagttatagaaaagaatgctattttcctaat 577
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aacatttttgttaaaaaaaaaaaaaacaccagttatagaaaagaatgctattttcctaac 359
Query: 578 caccaagaactacagtgagc-tttttttatagttttgaaaataag 621
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 358 caccaagaactacagtgagcttttttttatagttttgaaaataag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
