Query= MSMg01no479_n13.b1 MSMg01no479_n13.b1 CHROMAT_FILE:
MSMg01no479_n13.b1 PHD_FILE: MSMg01no479_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:59 2005
(612 letters)
>mm_chr14_62180332_62181343
Length = 1012
Score = 994 bits (514), Expect = 0.0
Identities = 569/588 (96%), Gaps = 7/588 (1%)
Strand = Plus / Minus
Query: 30 cctgtcc--aaaaaaaaaaaaaacccaaaaaacaaaaaacccacattttacactattatt 87
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1012 cctgtccaaaaaaaaaaaaaaaaaccaaaaaacaaaaaacccacattttacactattatt 953
Query: 88 taatttttctgtacccctttcaaatgtccttattttacccaatctgttttgtttgtttgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 taatttttctgtacccctttcaaatgtccttattttacccaatctgttttgtttgtttgt 893
Query: 148 tttttcaagacagggtttttctgtgtgtatgcctggctgtcctggaactcactttgtaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tttttcaagacagggtttttctgtgtgtatgcctggctgtcctggaactcactttgtaga 833
Query: 208 ccaggctgtcctcgacctcacagagatctgctctg-ttnctcattgctgggagtaaagg- 265
|||||||| |||| ||||||||||||||||||||| || |||| |||||||||||||||
Sbjct: 832 ccaggctggcctcaacctcacagagatctgctctgctt-ctcagtgctgggagtaaaggc 774
Query: 266 tggtgccatcacacccagctccaatcttgtcttttattcctaaatctttgtattgtctaa 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gggtgccatcacacccagctccaatcttgtcttttattcctaaatctttgtattgtctaa 714
Query: 326 gttgccaaccttgcccaccagttttagcagttaaaaatactaaataacttaaagacatcc 385
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gttgccaaccttgtttaacagttttagcagttaaaaatactaaataacttaaagacatcc 654
Query: 386 tgtgaggaatgagtgagctaatgctcagtgaggctgcttatagagaactttcaaactaac 445
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 653 tgtgaggaatgagtgagctaatgctcagagaggctgcttatagagaactttcaagctaac 594
Query: 446 caacagaagtaattccctgaagtacaaaatatttccttttaaaatttatatggagagaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caacagaagtaattccctgaagtacaaaatatttccttttaaaatttatatggagagaca 534
Query: 506 gcgcaaccattaaaggctagactcgcaaccaataatcaaatcaatatttgtgaagagctt 565
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gctcaaccattaaaggctagactcgcaaccaataatcaaatcaatatttgtgaagagctt 474
Query: 566 ttggggccccttctatc-atagcttggcaggaatttgacattgggaca 612
||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 473 ttggggccccttctatcga-agcttggcaggaatttgacattgggaca 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_n13.g1 MSMg01no479_n13.g1 CHROMAT_FILE:
MSMg01no479_n13.g1 PHD_FILE: MSMg01no479_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:59 2005
(678 letters)
>mm_chr14_62042979_62044056
Length = 1078
Score = 1203 bits (622), Expect = 0.0
Identities = 653/664 (98%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 1 atctatgcactccacatgccttgttccactacacacattcactacactctagttactcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctatgcactccacatgccttgttccactacacacattcactacactctagttactcat 260
Query: 61 tcttcaggtagaagacacatttgaaattgtgatactgctactacttacatgcatctatgt 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tcttcaggtagaagacacatttgaaattgtgatactgctactacttacgtgcatctatgt 320
Query: 121 atgctgttccatcttttagacatacacaggaataaagtcttaaatcaacattctaacacc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 atgctgttccatcttttagacatacacaggaataaagtcttgaatcaacattctaacacc 380
Query: 181 ttgaagaagtactaaatacttttccaaagtgagtaacaatcctaccaacaagtgaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaagaagtactaaatacttttccaaagtgagtaacaatcctaccaacaagtgaatgat 440
Query: 241 ggtttttatctgtgcatcttcctaaggcttattatttaactataggaaccctagtgtaca 300
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ggttccaatctgtgcatcttcctaaggcttattatttaactgtaggaaccctagtgtaca 500
Query: 301 acagtacacctcactattgttttgatttgctaattggtagtaatgtttattaacttttat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 acagtacacctcactattgttttgatttgctaattggtagtaatgttcattaacttttat 560
Query: 361 tgtacttattggccacttacataccttctttgaggaatatcctattcaaatctgttactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtacttattggccacttacataccttctttgaggaatatcctattcaaatctgttactt 620
Query: 421 tttaactgactaatgttaatgctgtgttgctgtactgcagtttttgtgtagtctagacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaactgactaatgttaatgctgtgttgctgtactgcagtttttgtgtagtctagacac 680
Query: 481 aaagacgcctcagcagataaaagcaggtgcccacagtctgacgaccttagctcaatccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagacgcctcagcagataaaagcaggtgcccacagtctgacgaccttagctcaatccct 740
Query: 541 agatcccataaggtagccagagaacagactttcaaaagttgacctttgatctccatacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatcccataaggtagccagagaacagactttcaaaagttgacctttgatctccatacat 800
Query: 601 atgtgggaatatgcacacacaca--aaatcatatttcatgtatttgcttttatatatata 658
||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 801 atgtgggaatatgcacacacacacaaaatcatatttcatgtatttgcatatatatatata 860
Query: 659 tata 662
||||
Sbjct: 861 tata 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
