BAC Information

Click to search

BAC

Clone NameMSMg01-480D16
Chromosome14 (Build37)
Map Location 78,793,880 - 79,002,987
singlet/doubletdoublet
Overlap geneLOC219180, Akap11, Dgkh
Upstream geneD230005D02Rik, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480D16.T7 (MSMg01no480_d16.b1)MSMg01-480D16.TJ (MSMg01no480_d16.g1)
ACCAG560920AG560921
length716718
length of high quality
(start - end)		572 (80 - 651)641 (78 - 718)
definitionCHROMAT_FILE: MSMg01no480_d16.b1 PHD_FILE: MSMg01no480_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:28 2005CHROMAT_FILE: MSMg01no480_d16.g1 PHD_FILE: MSMg01no480_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,793,880 - 78,794,451)(79,002,347 - 79,002,987)
sequence
NGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAGAAGAGCGC
GGAATTCCAAAGGTTTACCAATAAGCAAAAACTGTCTGCAGCTGGCAAAA
CCCCGCCTCTGCTAGAGCAGGAGGCAAAACACAGTCAGCTGCTGTGGGAG
TTCTGAGGCAGCCCCACATCCCTACGCCTGGTATTAAAACAAAAACGAGT
CCTTATAATATTTCTGTGTTTTTAAAAGAAACCAAAGTTCTAGGATTCTC
TCTACGCACATCCTTTCAGGTGCTGGACCTTTCAGCACCAACCACGCATA
CCTGGTGAGCATAGCTACTGTTCTGTATTTGCTGTAACAAGATATTGAAC
ATAGCCAACCTAAGGAAGGAAGGGTGTCTTCAGGCTCACAGTGTAAAAGG
AACATGGTCCATCATGTGAAGTCACAGTGCCTGGAGTGCAAGGCCACTGG
GTTCACTCTGTCTTCAGTATGGAACACAGACAGATGGACACCGGTGCCTG
GCTCACTGTCTCTCTCTCTCCTTCTCCTCAAAGACCGACTATCTTTGCAT
CTATAGAAGATGGGGCCCCTGTTGCCTCCCTAGGTGGAGAAGACAGCAGC
CAGAGACCCTGAATGTGTTATAAAAACAGAGCGGACACAAACCCTGCCGT
ACCACATGTGAACTGAGAAGAAAACCAAGCTGCTCAGAGGTCAAGTACCA
CCTGGTGTCATATACN

NNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATTTCCACTTACGCAAGTC
TGTTTCCCTTCTTACTACTTAAAGTTATGGATGAGCCAGCAGTGCAGCCC
TCTGAGCCAGTCAGTCCGTCTTGTGACTATGATACAGAAACAGATGAAGC
TAAAGAGGACGACGCGAAAGAGTCGCTATCAGGTGAGAAGTCAATGATGA
CGTCTTCAGGAAAGCTCAGTTACAACTGGCTTTGCATTTATTTAATTTTA
AGTATGAAATGAACTGTTGTTTTTCNATTTTTCTAAAGGCCTTTGGGCAG
TTTGTGTTATTCATGAACACTAAAATAATAATGGCAACGTATGAGTTAGG
TTGACAAGTATTCTTATATCTCTTGTGAGATCTAAGAGATATCTAGAGAC
CAACAATAAACTAAGTGTTATGGGATGATTGAGTGTCTTAGAAGAAATAG
CCAGGTTTCCCCACTTTAGCGTGGGTTGCTCTCAGATTTCTTGGGAAACT
GCGAGAAAGCTGCTGGCCTTTGCTGCATCAAGCTTGGCCTTTGACGGATT
CAGCAGAGCTTTATATTCTGCTGATTGACCAATGCTTGTTGCGAAGCTAA
GCTTTAAAACCAAAAGCCTTCTAACTACAACTCTGTCTCTACCAAATTAC
TTTCTGCCTAGAAGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_d16.b1 MSMg01no480_d16.b1 CHROMAT_FILE:
MSMg01no480_d16.b1 PHD_FILE: MSMg01no480_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:28 2005
         (572 letters)



>mm_chr14_78793680_78794651
          Length = 972

 Score = 1029 bits (532), Expect = 0.0
 Identities = 562/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgtctgcagctggcaaaaccccgcctctgctagagcaggaggcaaaacacagtcagc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgtctgcagctggcaaaaccctgcctctgctagagcaggaggcaaaacacagtcagc 260

                                                                       
Query: 61  tgctgtgggagttctgaggcagccccacatccctacgcctggtattaaaacaaaaacgag 120
           |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tgctgtggaagttctgaagcagccccacatccctacacctggtattaaaacaaaaacgag 320

                                                                       
Query: 121 tccttataatatttctgtgtttttaaaagaaaccaaagttctaggattctctctacgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttataatatttctgtgtttttaaaagaaaccaaagttctaggattctctctacgcac 380

                                                                       
Query: 181 atcctttcaggtgctggacctttcagcaccaaccacgcatacctggtgagcatagctact 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 atcctttcaggtgctggacctttcagcaccaaccacgcatacctggagagcatagctact 440

                                                                       
Query: 241 gttctgtatttgctgtaacaagatattgaacatagccaacctaaggaaggaagggtgtct 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctgcatttgctgtaacaagatattgaacatagccaacctaaggaaggaagggtgtct 500

                                                                       
Query: 301 tcaggctcacagtgtaaaaggaacatggtccatcatgtgaagtcacagtgcctggagtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tcaggctcacagtgtaaaaggaacatggtccatcatgtgaagtcacagtgcctagagtgc 560

                                                                       
Query: 361 aaggccactgggttcactctgtcttcagtatggaacacagacagatggacaccggtgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 aaggccactgggttcactctgtcttcagtatggaacacagacagatggacaccggtgccg 620

                                                                       
Query: 421 ggctcactgtctctctctctccttctcctcaaagaccgactatctttgcatctatagaag 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ggctcactgtctctctctctccttctcctcaaagaccgtctatctttgcatctatagaag 680

                                                                       
Query: 481 atggggcccctgttgcctccctaggtggagaagacagcagccagagaccctgaatgtgtt 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 atggggcccctgttgcctccctaggcggagaagacagcagccagagaccctgaatgtgtt 740

                                           
Query: 541 ataaaaacagagcggacacaaaccctgccgta 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 ataaaaacagagcggacacaaaccctgccgta 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no480_d16.g1 MSMg01no480_d16.g1 CHROMAT_FILE:
MSMg01no480_d16.g1 PHD_FILE: MSMg01no480_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:28 2005
         (641 letters)



>mm_chr14_79002147_79003187
          Length = 1041

 Score = 1180 bits (610), Expect = 0.0
 Identities = 633/641 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagcc 782

                                                                       
Query: 61  agcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacagatga 722

                                                                       
Query: 121 agctaaagaggacgacgcgaaagagtcgctatcaggtgagaagtcaatgatgacgtcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 721 agctaaagaggacgacgcgaaagagtcgctatcaggtgagaagtcgatgatgacgtcatc 662

                                                                       
Query: 181 aggaaagctcagttacaactggctttgcatttatttaattttaagtatgaaatgaactgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 aggaaagctcagttacaactggctttgcatttatttaattttaagtatgaaacgaactgt 602

                                                                       
Query: 241 tgtttttcnatttttctaaaggcctttgggcagtttgtgttattcatgaacactaaaata 300
           ||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 601 tgaatttctatttttctaaaggcctttgggcagtctgtgttattcatgaacactaaaata 542

                                                                       
Query: 301 ataatggcaacgtatgagttaggttgacaagtattcttatatctcttgtgagatctaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataatggcaacgtatgagttaggttgacaagtattcttatatctcttgtgagatctaaga 482

                                                                       
Query: 361 gatatctagagaccaacaataaactaagtgttatgggatgattgagtgtcttagaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gatatctagagaccaacaataaactaagtgttatgggatgattgagtgtcttagaagaaa 422

                                                                       
Query: 421 tagccaggtttccccactttagcgtgggttgctctcagatttcttgggaaactgcgagaa 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagccaggtttccccactttagcatgggttgctctcagatttcttgggaaactgcgagaa 362

                                                                       
Query: 481 agctgctggcctttgctgcatcaagcttggcctttgacggattcagcagagctttatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agctgctggcctttgctgcatcaagcttggcctttgacggattcagcagagctttatatt 302

                                                                       
Query: 541 ctgctgattgaccaatgcttgttgcgaagctaagctttaaaaccaaaagccttctaacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctgattgaccaatgcttgttgcgaagctaagctttaaaaccaaaagccttctaacta 242

                                                    
Query: 601 caactctgtctctaccaaattactttctgcctagaagtgat 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caactctgtctctaccaaattactttctgcctagaagtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |