BAC Information

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BAC

Clone NameMSMg01-480I16
Chromosome14 (Build37)
Map Location 79,482,304 - 79,668,773
singlet/doubletdoublet
Overlap gene1300010F03Rik, LOC100043765, AU017455
Upstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream gene1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480I16.T7 (MSMg01no480_i16.b1)MSMg01-480I16.TJ (MSMg01no480_i16.g1)
ACCAG561158AG561159
length717715
length of high quality
(start - end)		389 (326 - 714)290 (354 - 643)
definitionCHROMAT_FILE: MSMg01no480_i16.b1 PHD_FILE: MSMg01no480_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:53 2005CHROMAT_FILE: MSMg01no480_i16.g1 PHD_FILE: MSMg01no480_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,482,304 - 79,482,692)(79,668,484 - 79,668,773)
sequence
NAAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAAGAGGC
GCGGAATTCTTCCAGTTACACATAAGGAGCTACCCAGAACTGATACGCAC
AATATTATTAAGTTAGTTCCTTTGCTTATATTGAATAATCATTTAACTAT
ATATGAAACATTCTACCTTTTATAAGTAGCACTGGATCCACTTTAGCCAT
TACATTTCAATATAATGTTTTCACACTCTTTCTTCACAATGGAAATATAC
TAGTCCTGGATTTGTTAACTTATGTTATTTTGCTGGCTTGAGCAACTCTG
GGTCTTTTTCTATTTGGATTTTTAAATGGGTTCTTGGTTTAGGAAGAAAT
GTAGTCATAAGAAATCTTATAGTGCTTTAGACACAGTATACTTCATTAAA
GCAAATGAAAGAGAAATGTAATGAGCCCCAGCATGAGAAAGCACTCATGA
AGGTAAGCATATGGTATTACTATAGTTTTAGGTGCCATGCCAAACGATAA
AGTCCAGTATGTCAAGATATTAGATCGTGAAATATTGTATTCTGGAACAG
CTGTTTTAGCGACTACCCAATGCCTTCACTAAGACCGTGGCTTTGTTATA
GGGCCCAGTACTTGTGAACATGGAAAAGTACCCAATAGAAAAACATGAAG
CGAGATTCCTAAGCTTTACTGAAGAGTGTACGTCTTGGAAGTTTCCATTG
GATGAAGTCAATTTAAN

AAACGAAGCAGTNGGGAGGCCTGGGGGNCGCCCGGGTTCCGACCGGGGGG
NGAANNANAGAAGTTGACGGCACCGAGGGGGGAGNANGCNCNGNAGAGCG
GGCCAGCGGAGAGGGANCACAGACCCCGGGGAAGGGGGAAGGANNNGNGC
ANANNANANNAANTANANNAANAAGCCGGCGCAAGNNNNCCCAAGGCGCG
CCACCAAGGACACAGCGCNANGAACAGACAGNGCCGANGNAGGAGGGCNA
GATTTTTCAAAAACTAGCTAGTGGAGGTGAGGGCCCCTGATCTCTCAAAG
CCAGTCTCTGCATGGTGTTTTTTTTTTTACCNCCNGAGNGNGGGAAANCA
GNAAGCCACATGGAGACCCGGGAGGGAANTAGGNCACACCTGGAAGAGCG
GGNTTCCCAGGTCTCACGTAAGTGGCTCTTCTCTTTCCTCACATCCGCTC
CAGTTCCCCCCATCTCAGTCCCTTCTTCCTTTCCCTCCCTACCATCTCAG
CCTTCTTACTTCTGCCTCCCCATTTCCCAGAAGTCTTCCAGCCCTCTCCC
AAGCTTGGAGTCTTTGCTTCTCACTTTCATCCCTTTTTTTCTCACTGAAA
GAATCAAGATCTCCCACTGTGCCCTATAACCTGTGATCCCCCAAATTTTT
TTTTTTCTTCTCCTCTGGATCTACTGGTCTTAAAGCAGAGCATAGGGGGT
TTATAAAGAGCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_i16.b1 MSMg01no480_i16.b1 CHROMAT_FILE:
MSMg01no480_i16.b1 PHD_FILE: MSMg01no480_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:53 2005
         (389 letters)



>mm_chr14_79482104_79482892
          Length = 789

 Score =  706 bits (365), Expect = 0.0
 Identities = 383/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggttcttggtttaggaagaaatgtagtcataagaaatcttatagtgctttagacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 atgggttcttggtttaggaagaaatgtagtcataagaaatcttatagtgctttagacacg 260

                                                                       
Query: 61  gtatacttcattaaagcaaatgaaagagaaatgtaatgagccccagcatgagaaagcact 120
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatacttcattaaagtaaatgaaagagaaatgtaatgagccccagcatgagaaagcact 320

                                                                       
Query: 121 catgaaggtaagcatatggtattactatagttttaggtgccatgccaaacgataaagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 catgaaggtaagcatatggtattactatagttttaggtgccatgccaaacgataaagtcg 380

                                                                       
Query: 181 agtatgtcaagatattagatcgtgaaatattgtattctggaacagctgttttagcgacta 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatgtcaagatattagatcatgaaatattgtattctggaacagctgttttagcgacta 440

                                                                       
Query: 241 cccaatgccttcactaagaccgtggctttgttatagggcccagtacttgtgaacatggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaatgccttcactaagaccgtggctttgttatagggcccagtacttgtgaacatggaa 500

                                                                       
Query: 301 aagtacccaatagaaaaacatgaagcgagattcctaagctttactgaagagtgtacgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 aagtacccaatagaaaaacatgaagcgagattcctaagctttactgaagagtgtacgtcc 560

                                        
Query: 361 tggaagtttccattggatgaagtcaattt 389
           |||||||||||||||||||||||||||||
Sbjct: 561 tggaagtttccattggatgaagtcaattt 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no480_i16.g1 MSMg01no480_i16.g1 CHROMAT_FILE:
MSMg01no480_i16.g1 PHD_FILE: MSMg01no480_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:53 2005
         (290 letters)



>mm_chr14_79668284_79668973
          Length = 690

 Score =  505 bits (261), Expect = e-147
 Identities = 282/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccacatggagacccgggagggaantaggncacacctggaagagcgggnttcccaggtc 60
           ||||||||||||||||||||||||| || | |||||||||||||||| | ||||||||||
Sbjct: 490 agccacatggagacccgggagggaattatgtcacacctggaagagcgtgtttcccaggtc 431

                                                                       
Query: 61  tcacgtaagtggctcttctctttcctcacatccgctccagttccccccatctcagtccct 120
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 430 tcacgtaagaggctcttctctttcttcacatccgctccagttccccccatctcagtccct 371

                                                                       
Query: 121 tcttcctttccctccctaccatctcagccttcttacttctgcctccccatttcccagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcttcctttccctccctaccatctcagccttcttacttctgcctccccatttcccagaag 311

                                                                       
Query: 181 tcttccagccctctcccaagcttggagtctttgcttctcactttcatccctttttttctc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcttccagtcctctcccaagcttggagtctttgcttctcactttcatccctttttttctc 251

                                                             
Query: 241 actgaaagaatcaagatctcccactgtgccctataacctgtgatccccca 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 actgaaagaatcaagatctcccactgtgccctataacctgtgatccccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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