BAC Information

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BAC

Clone NameMSMg01-481E22
Chromosome14 (Build37)
Map Location 88,873,195 - 88,873,871
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481E22.T7 (MSMg01no481_e22.b1)MSMg01-481E22.TJ (MSMg01no481_e22.g1)
ACCAG561744AG561745
length764749
length of high quality
(start - end)
586 (44 - 629)677 (73 - 749)
definitionCHROMAT_FILE: MSMg01no481_e22.b1 PHD_FILE: MSMg01no481_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:54 2005CHROMAT_FILE: MSMg01no481_e22.g1 PHD_FILE: MSMg01no481_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTACTAAATCCATCTGGCCCTGAGATTTTTTTTTTTTTTTGGTTGG
AAGGTTTTTAATGAATTCTTCTTTTTCCTTGTGTGATATAGGCCTGTTTA
GATAGTTTACCTATCCTTGAATTAACTTTGGTCTGTGGCATCTGTCTAAA
AAACCATCCATTTCATCTAGAATATCCAGTTTTGTTGAATATAGGCTTTT
ATAGTAGGATCTAATGATTTTTTTGAACTTCCTCCATTCTGTTGTTATGT
CTCCCTTTTCATTTCTGATTTTATTAATTTGGAAACTGCCTCTTAGCCCT
TTAGTTAATTTGGCTACAGTTTTAATATATCTCATTGCTTCTTTCAAAGA
ATCAACTTTTGGTTTTGCTGATTCTCTGTATTTTTTTCTTTGTTTCTGTT
TGGTTGATTTTGGCCCGGAGTTTGACTATTTCCTGCCTTCACCTCCTCTT
GGGTAAGTTTGCTTCTTTTTGTTCTAGAGCTCTCAGGTGTGCTGTTAAGT
TGTTTGTATAAGATCTCTCCAGTTTCTTTACCAGGGCACTTCATCCCATA
AACTTTCCTCTTAGCACTACTTTCATTGTGTTCCATAAGATTGTGTATTT
TGTGTCAACATTTTCATTAAATTCCAGGAAGACTTTAATTTCTTTATTTT
TTCCTTGTCCAAGTTATCATTGAGTAGAAGTGTTCAGCTTTCACATGTAT
TTGGGCTTTCTGTA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACAGGTTCTGAAAGTACTCTTTGGAGG
GACAATATGAAGCACTTTTGTTTTAAGTTACTATGCTGGTTGTTGTGTCC
CTGAATAGTTTTTGTTTGTCACAAAAACTTGAAATCTTGGCACAACACTA
GGTGACATCTTACATGGGACATGCATGCTGTTAAACATACTACTTGCTAT
CATCTTCCCTCTTTGAGGATCTAAGGAAAAGATTCATGCAGCATTTTGTT
TTTTGACTGAGTTTAAAAAACAGAGACAGAACCAAATGAGCTTCTTTGGT
TATATGCACTATTTTCCTGGGCATTGTAAAAGCATCCCAGACTACTGTTC
CTTCTGGAGGTAGCCTTGTGACCTACCATCTGGTGCCACAGATTTCTTTT
TAAAGATGATTTAGAGAGCTTCCATGCTATTAGTCCTTTGAAAATAATAC
TCATGAGCTTCTCAGATGTCTCAGTCACTCTGGGCCTGCTTTCCAGGTGT
TTTGTAAAAATTGATCTAGAAGAATAGTTAGATTATATGCCTCCCAAGTC
TATTTCTGCCGTGGACAAAGGACACAGCATGAAATAATGGTCGGCATTTG
GAACAGAGCTGGGGATTTGGATACTACTCCTCTCGGGATTGTTGCTTATT
TCCGGTGTGACTTTAGGCACATCGTCACACCTCTGCTTCAATTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_e22.g1 MSMg01no481_e22.g1 CHROMAT_FILE:
MSMg01no481_e22.g1 PHD_FILE: MSMg01no481_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:54 2005
         (677 letters)



>mm_chr14_88872995_88874071
          Length = 1077

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggttctgaaagtactctttggagggacaatatgaagcacttttgttttaagttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaggttctgaaagtactctttggagggacaatatgaagcacttttgttttaagttact 260

                                                                       
Query: 61  atgctggttgttgtgtccctgaatagtttttgtttgtcacaaaaacttgaaatcttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctggttgttgtgtccctgaatagtttttgtttgtcacaaaaacttgaaatcttggca 320

                                                                       
Query: 121 caacactaggtgacatcttacatgggacatgcatgctgttaaacatactacttgctatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacactaggtgacatcttacatgggacatgcatgctgttaaacatactacttgctatca 380

                                                                       
Query: 181 tcttccctctttgaggatctaaggaaaagattcatgcagcattttgttttttgactgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttccctctttgaggatctaaggaaaagattcatgcagcattttgttttttgactgagt 440

                                                                       
Query: 241 ttaaaaaacagagacagaaccaaatgagcttctttggttatatgcactattttcctgggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaaaacagagacagaaccaaatgagcttctttggttatatgcactattttcctgggc 500

                                                                       
Query: 301 attgtaaaagcatcccagactactgttccttctggaggtagccttgtgacctaccatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtaaaagcatcccagactactgttccttctggaggtagccttgtgacctaccatctg 560

                                                                       
Query: 361 gtgccacagatttctttttaaagatgatttagagagcttccatgctattagtcctttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgccacagatttctttttaaagatgatttagagagcttccatgctattagtcctttgaa 620

                                                                       
Query: 421 aataatactcatgagcttctcagatgtctcagtcactctgggcctgctttccaggtgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataatactcatgagcttctcagatgtctcagtcactctgggcctgctttccaggtgttt 680

                                                                       
Query: 481 tgtaaaaattgatctagaagaatagttagattatatgcctcccaagtctatttctgccgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 tgtaaaaattgatctagaagaatagttagattatatgcctcccaagtctatttctgcctt 740

                                                                       
Query: 541 ggacaaaggacacagcatgaaataatggtcggcatttggaacagagctggggatttggat 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 ggacaaaggacacagcatgaaataatggtcggcattttgaacagagctggggatttggat 800

                                                                       
Query: 601 actactcctctcgggattgttgcttatttccggtgtgactttaggcacatcgtcacacct 660
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctactcctctcgggattgttgcttatttccggtgtgactttaggcacatcgtcacacct 860

                            
Query: 661 ctgcttcaattttcttc 677
           |||||||||||||||||
Sbjct: 861 ctgcttcaattttcttc 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)