BAC Information

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BAC

Clone NameMSMg01-482A04
Chromosome14 (Build37)
Map Location 89,212,669 - 89,380,019
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A04.T7 (MSMg01no482_a04.b1)MSMg01-482A04.TJ (MSMg01no482_a04.g1)
ACCAG562282AG562283
length717665
length of high quality
(start - end)		679 (39 - 717)600 (59 - 658)
definitionCHROMAT_FILE: MSMg01no482_a04.b1 PHD_FILE: MSMg01no482_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:50 2005CHROMAT_FILE: MSMg01no482_a04.g1 PHD_FILE: MSMg01no482_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,379,345 - 89,380,019)(89,212,669 - 89,213,268)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TAATGTCAAAATTGTAATTATATATGTGTATATAGAGTAAGTGGTCAATA
ATTGCAATGAAATGGAAAAAAGTATACTTTACAACTAATCATAATTTGGA
AATAACTTGGATTAGTATTAATTATTATATTAATTAATTGATTCATCAAA
CTGATTTCTTTAAAAATTAAAGTAATAAATTTGTGCTTTTTATTCTTAAT
TACAAATTTAATAGAAATTCACATGTATTCCTCCCAACACATTTATAAGT
TTTGCATGATGAAGACACTTCTACTCTAAATGTGATTAAATAATACATGG
GAGAGTGGAAGTTTGAAAACAATGAAATGAAATTGTCATTGTGAAGTTCT
GACATCTACATTGCTTTTGGGCTTGAAAGTTGAACTTCGAAAGAGCTTTA
ATAGCATGTGTGCACTTCTAGTTTTATTTTCCTATGTGACTTTAATATTT
TCCATATTTATTATTAGCCGCTCTCATCATCATTATCGTTATCTTAAATG
CACTGTTATTTATTTACACATAAGGCTACTTGCACCATAGCAAAACATTT
TAGCTATTTAGAGGAGATTAAGCAGACGGTGATGTTTTCATAAAACGAGG
TCCTTGGCATCTGTCAGTTTATTATTTCTTAAAGGAAACTTAGAAATTCT
TTATGTGTTGGGGTAGA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTATTTAGCTTTGTACTCTACTTTTTAATAGGGTTATTTGG
TTCTCTGGAGCCTAAGTTCTTGAGGTCTTTGTATATTTTGGATATTAGCC
CTTTGTCAGATATAGGGCTGATAAAGATCTTTCCCCAATTGTGAACTGCC
ACTTTGTCCTATTGATTGTGTCCTTTGCCTTACAGCTTTCAAATTTTATG
AGGTCCCATTTGAATCTTTTTGAGAATTTAATATAATTACCCTTTCAACT
TCACTTTCCTCTCTCTAAACAGTCCCACATACAATTTTCCTTTCTTTCAA
GTAATTGACAGTTTTTAATTACAAACACACACTAAAATTTAAATTTTTTG
CTATAATCAAAAACAAAATAATAAACTTCTTTTATTCTGAGGTTGACATT
TTCCATTTCAATTTGATACAATAGACAATCTTTGCCACTGGACTGGGTAG
ATTTTACTTACTGCATTGTTTTATGTTTTGCTTCTTTTTCCTCCCTCAGG
TAATCATGATTTATATATTTTTAAAAACAACTGAAAAATGAATTCCCTTA
GACCTAGACATATCCCAAGTTACTTCATTACTACATAGTGCTTTAGTTAT
TTTCCCAACTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a04.b1 MSMg01no482_a04.b1 CHROMAT_FILE:
MSMg01no482_a04.b1 PHD_FILE: MSMg01no482_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:50 2005
         (679 letters)



>mm_chr14_89378994_89380072
          Length = 1079

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcattaatgtcaaaattgtaattatatatgtgtatatagagtaagtggtcaataat 64
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gaattcattaaagttaaaattgtaattatatatgtgtatatagagtaagtggtcaataat 967

                                                                        
Query: 65   tgcaatgaaatggaaaaaagtatactttacaactaatcataatttggaaataacttggat 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  tgcaatgaaatggaaaaaagtatactttacaactaatcataatttggaaataacttggat 907

                                                                        
Query: 125  tagtattaattattatattaattaattgattcatcaaactgatttctttaaaaattaaag 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  tagtattaattattatattaattaattgattcatcaaactgatttctttaaaaattaaag 847

                                                                        
Query: 185  taataaatttgtgctttttattcttaattacaaatttaatagaaattcacatgtattcct 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  taataaatttgtgctttttattcttaattacaaatttaatagaaattcacatgtattcct 787

                                                                        
Query: 245  cccaacacatttataagttttgcatgatgaagacacttctactctaaatgtgattaaata 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  cccaacacatttataagttttgcatgatgaagacacttctactctaaatgtgattaaata 727

                                                                        
Query: 305  atacatgggagagtggaagtttgaaaacaatgaaatgaaattgtcattgtgaagttctga 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  atacatgggagagtggaagtttgaaaacaatgaaatgaaattgtcattgtgaagttctga 667

                                                                        
Query: 365  catctacattgcttttgggcttgaaagttgaacttcgaaagagctttaatagcatgtgtg 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  catctacattgcttttgggcttgaaagttgaacttcgaaagagctttaatagcatgtgtg 607

                                                                        
Query: 425  cacttctagttttattttcctatgtgactttaatattttccatatttattattagccgct 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  cacttctagttttattttcctatgtgactttaatattttccatatttattattagccgct 547

                                                                        
Query: 485  ctcatcatcattatcgttatcttaaatgcactgttatttatttacacataaggctacttg 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  ctcatcatcattatcgttatcttaaatgcactgttatttatttacacataaggctacttg 487

                                                                        
Query: 545  caccatagcaaaacattttagctatttagaggagattaagcagacggtgatgttttcata 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  caccatagcaaaacattttagctatttagaggagattaagcagacggtgatgttttcata 427

                                                                        
Query: 605  aaacgaggtccttggcatctgtcagtttattatttcttaaaggaaacttagaaattcttt 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426  aaacgaggtccttggcatctgtcagtttattatttcttaaaggaaacttagaaattcttt 367

                           
Query: 665  atgtgttggggtaga 679
            |||||||||||||||
Sbjct: 366  atgtgttggggtaga 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_a04.g1 MSMg01no482_a04.g1 CHROMAT_FILE:
MSMg01no482_a04.g1 PHD_FILE: MSMg01no482_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:50 2005
         (600 letters)



>mm_chr14_89212469_89213468
          Length = 1000

 Score = 1160 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatttagctttgtactctactttttaatagggttatttggttctctggagcctaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatttagctttgtactctactttttaatagggttatttggttctctggagcctaagtt 260

                                                                       
Query: 61  cttgaggtctttgtatattttggatattagccctttgtcagatatagggctgataaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaggtctttgtatattttggatattagccctttgtcagatatagggctgataaagat 320

                                                                       
Query: 121 ctttccccaattgtgaactgccactttgtcctattgattgtgtcctttgccttacagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttccccaattgtgaactgccactttgtcctattgattgtgtcctttgccttacagctt 380

                                                                       
Query: 181 tcaaattttatgaggtcccatttgaatctttttgagaatttaatataattaccctttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaattttatgaggtcccatttgaatctttttgagaatttaatataattaccctttcaa 440

                                                                       
Query: 241 cttcactttcctctctctaaacagtcccacatacaattttcctttctttcaagtaattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcactttcctctctctaaacagtcccacatacaattttcctttctttcaagtaattga 500

                                                                       
Query: 301 cagtttttaattacaaacacacactaaaatttaaattttttgctataatcaaaaacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtttttaattacaaacacacactaaaatttaaattttttgctataatcaaaaacaaaa 560

                                                                       
Query: 361 taataaacttcttttattctgaggttgacattttccatttcaatttgatacaatagacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taataaacttcttttattctgaggttgacattttccatttcaatttgatacaatagacaa 620

                                                                       
Query: 421 tctttgccactggactgggtagattttacttactgcattgttttatgttttgcttctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttgccactggactgggtagattttacttactgcattgttttatgttttgcttctttt 680

                                                                       
Query: 481 tcctccctcaggtaatcatgatttatatatttttaaaaacaactgaaaaatgaattccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctccctcaggtaatcatgatttatatatttttaaaaacaactgaaaaatgaattccct 740

                                                                       
Query: 541 tagacctagacatatcccaagttacttcattactacatagtgctttagttattttcccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagacctagacatatcccaagttacttcattactacatagtgctttagttattttcccaa 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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