BAC Information

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BAC

Clone NameMSMg01-482L19
Chromosome14 (Build37)
Map Location 28,873,124 - 28,873,448
singlet/doubletsinglet
Overlap geneErc2
Upstream geneIl17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482L19.T7 (MSMg01no482_l19.b1)MSMg01-482L19.TJ (MSMg01no482_l19.g1)
ACCAG562831AG562832
length744854
length of high quality
(start - end)
230 (80 - 309)325 (73 - 397)
definitionCHROMAT_FILE: MSMg01no482_l19.b1 PHD_FILE: MSMg01no482_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:42 2005CHROMAT_FILE: MSMg01no482_l19.g1 PHD_FILE: MSMg01no482_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAGCTTATAATTGCGGCGCTAAANGATCACCATCAACAGAGGACCGNG
GAATTCCCCTTTCCCGGGGCATATAAGNTTGCAAGTCCAATGGGCCTCTC
TTTCCAGGGATGGTCGACTAGGCCATCTTTTGATATATATGCAGCTAGAG
TCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGG
GNTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGG
GAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTT
TGCTAGGCCCCGGTTTTTTCTCACAAGAGACAGCTACATCTGGGTCCTTT
CAATAAAATCTTGCTAGTGTATGCTATGGTGTCAGCGTTTGGATGCTGAT
TATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGNCCATCCTTTCA
TCTCAGCTCCAAACTTTGTCTCCGCAAGTCCTTCCATGGGTGCNTTGCTC
TTAAATCTAAGTGAGAGGCATAGTGTTCCCGCTTCAGCCTTCTTTCGTCT
TGAGTTTCGTGTGTTTATGCGATTATATCTTGTAGCTTGGGTATCGTTGG
TGTTGGGGCTAATATCCACTTAGCAGCTGATTACCATTTGTGTGAGTTTC
GTTTGTGAGTGTGTCTGCGTCACCTGCGGTGGGATGGCCCTGCTGGGTCC
TGTCCCACTTTGCCCTTGGTAAGTTTCATAGAATGCCCATTCTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGTGTATGGCTCATGCTTAGTGCCCT
GTAAATATTTGTTGATATGTAAAGCGGGAAGGCTAAGCACTTTGCTCAGC
ATCAAGAAACCAGATGGGAGCTACTTCATTGTCATACCGTAAAATGGCAG
GGAAAGGGGAAAAGAAAGAAAGGGGCAACTTGTGTAGACATTTCTATTTG
AATGACACAGCAGAACATGTTGGTCCTTCATGTGCAGTGTGTTCGGAAGA
AGGGGTTTAGGCTCCTTCCTCTAATCTAGCTTGACTGATGGAGGTAGGGT
GTAGAAGGGGGAAGTGATTTGGGGTCTGGAGATAGGGCAGTGGAGATTTA
NTTTTTTTTTTTTTCCCCCCCCCCCCCCCCACATTTAGTTTTCCGCTATT
TTAGTTATGCCTTAATCTCATACTCTACCTATTTTTTTCTCTTTTTGCCC
ATCTCCGATCACCGTTTTCTTCTCCTTTTTATTTTTTTTCCCCTATACCC
GTTTTCCCCCAAAATTTATTTCCCTCTTTGTTCCGCTCTTGCACCTGTTT
TTTTGTTCTCTACTTTCAGTCCTAGATTCTTTTCTCTTTTTTCGTCTCTC
CTTACGTCTCCTTATTCCTCTGCTACTCGCTCTATATAATGCTTAACACA
CCACTATTTTCTCGCTTTTTCCCCTTCTCTCTATTTCTCCTTTCTATCTA
CTGTCCTCTCTCTGTTATTCTTCATGTCCGCCCTCTATTTTCGGCTATTG
TGTTCTTTCTCGCCTCCGTTTATTTCGGTCTGTCATGTCTCTTTATCTCT
TCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_l19.g1 MSMg01no482_l19.g1 CHROMAT_FILE:
MSMg01no482_l19.g1 PHD_FILE: MSMg01no482_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:42 2005
         (325 letters)



>mm_chr14_28872924_28873648
          Length = 725

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgtatggctcatgcttagtgccctgtaaatatttgttgatatgtaaagcgggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 201 tcagtgtatggctcatgcttagtgccctgtaaatatttgttgatacgtaaagcaggaagg 260

                                                                       
Query: 61  ctaagcactttgctcagcatcaagaaaccagatgggagctacttcattgtcataccgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 261 ctaagcactttgctcagcatcaagaaaccagatgggagctacttcattgtcatactgtga 320

                                                                       
Query: 121 aatggcagggaaaggggaaaagaaagaaaggggcaacttgtgtagacatttctatttgaa 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aatggcagggaaaggggaaaagaaagaaaggggcaacttgggtagacatttctatttgaa 380

                                                                       
Query: 181 tgacacagcagaacatgttggtccttcatgtgcagtgtgttcggaagaaggggtttaggc 240
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tgacacagcagaaaatgttggtccttcatgtgcagtgtgttcagaagaaggggtttaggc 440

                                                                       
Query: 241 tccttcctctaatctagcttgactgatggaggtagggtgtagaagggggaagtgatttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttcctctaatctagcttgactgatggaggtagggtgtagaagggggaagtgatttgg 500

                                    
Query: 301 ggtctggagatagggcagtggagat 325
           |||||||||||||||||||||||||
Sbjct: 501 ggtctggagatagggcagtggagat 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)