BAC Information

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BAC

Clone NameMSMg01-483D11
Chromosome14 (Build37)
Map Location 81,061,374 - 81,061,804
singlet/doubletsinglet
Overlap genenone
Upstream geneLect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D11.T7 (MSMg01no483_d11.b1)MSMg01-483D11.TJ (MSMg01no483_d11.g1)
ACCAG563196AG563197
length774779
length of high quality
(start - end)
595 (51 - 645)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no483_d11.b1 PHD_FILE: MSMg01no483_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:20 2005CHROMAT_FILE: MSMg01no483_d11.g1 PHD_FILE: MSMg01no483_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTTTACGATACCGAATGGCAGAGAAGCACTTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGTATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCT
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCA
AACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACT
CTAGAAGAATGAAGACTTGAGTGTGGACACTATGCCCCCTCTTAGATTTG
GGAACAAACACCCATGGAAGGAGT
NNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTTCTAAATTATGGGTT
TGTAAGAGTGGCAAAGTGTTCTTTTTTAATCATATGAAGACTGTCTGTAT
GTCTCTTGACCCAGCTTGAGAGACTGACACAGCATATGCAAATATCACAT
TTTTTTTCTATCTGAAATCTTTGCCATTTTATCTTTCTAAGGAAGATATT
TTTTTTTCCTTTTTATTCTGTGATTTGGATCTTAATCACTATCCTTATTA
TTGCTTGAGAATGAAAGGGAAAGTACTATTCTCTTGAGATGAGAAGGCAC
AAAGCTCTAAGCCTCTGCTGGAGTGTCACCACACAATACTGTATTTTCTG
ACTCGATTAAATGCTGATGGGTGGCTCTGAGGATCCAAAGCCTGGAGATT
TGTGGTGAGTGTGGAAACTTATTCTTTGTGTGTNGTGTGTGTGTGTGTGT
GTATGTGTGTGNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNT
NNTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTNNTTNTTTTTTTTTTT
TTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTNTNNTTTNNTTTTTTTTT
TNTTTTTNTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTNNNNNNNTNNTTTTTTTNTNTTTTTTTNNTNTTTTNNTTT
TTTTTTTTTTTTTTTTTTTTTTTNNNTNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d11.g1 MSMg01no483_d11.g1 CHROMAT_FILE:
MSMg01no483_d11.g1 PHD_FILE: MSMg01no483_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:20 2005
         (433 letters)



>mm_chr14_81061174_81062007
          Length = 834

 Score =  783 bits (405), Expect = 0.0
 Identities = 426/433 (98%), Gaps = 4/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccttctaaattatgggtttgtaagagtggcaaagtgttcttttttaatcatatgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccttctaaattatgggtttgtaagagtggcaaagtgttcttttttaatcatatgaaga 260

                                                                       
Query: 61  ctgtctgtatgtctcttgacccagcttgagagactgacacagcatatgcaaatatcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtctgtatgtctcttgacccagcttgagagactgacacagcatatgcaaatatcacat 320

                                                                       
Query: 121 tt-tttttctatctgaaatctttgccattttatctttctaaggaagatatttttttttcc 179
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 321 ttctttttctatctgaaatctttgccattttatctttctaaggaagataattttttt-cc 379

                                                                       
Query: 180 tttttattctgtgatttggatcttaatcactatccttattattgcttgagaatgaaaggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttttattctgtgatttggatcttaatcactatccttattattgcttgagaatgaaaggg 439

                                                                       
Query: 240 aaagtactattctcttgagatgagaaggcacaaagctctaagcctctgctggagtgtcac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagtactattctcttgagatgagaaggcacaaagctctaagcctctgctggagtgtcac 499

                                                                       
Query: 300 cacacaatactgtattttctgactcg-attaaatgctgatgggtggctctgaggatccaa 358
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 500 cacacaatactgtattttctgactcccattaaatgctgatgggtggctctgaggatccaa 559

                                                                       
Query: 359 agcctggagatttgtggtgagtgtggaaacttattctttgtgtgtngtgtgtgtgtgtgt 418
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 agcctggagatttgtggtgagtgtggaaacttattctttgtgtgt-gtgtgtgtgtgtgt 618

                        
Query: 419 gtgtatgtgtgtg 431
           |||| ||||||||
Sbjct: 619 gtgtgtgtgtgtg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)