Query= MSMg01no483_h04.b1 MSMg01no483_h04.b1 CHROMAT_FILE:
MSMg01no483_h04.b1 PHD_FILE: MSMg01no483_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:39 2005
(598 letters)
>mm_chr14_105297075_105298072
Length = 998
Score = 928 bits (480), Expect = 0.0
Identities = 555/600 (92%), Gaps = 35/600 (5%)
Strand = Plus / Plus
Query: 1 cccatgctagacagtgagactctgcctcagcacacacgaatacaaacacacatgcgcatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 221 cccatgctagacagtgagactctgcctcagcacacacgaatacaaacaca----cg--tg 274
Query: 61 cgcgtg--cacgtgcgcgcgcgcgcgcgcgcgcacacacacacacacacaaatgcacaca 118
|||||| ||| | || |||||||||||||||||| ||||||| |
Sbjct: 275 cgcgtgcacacat----------------gcacacacacacacacacacagatgcacata 318
Query: 119 tacacatatgcatgtatctgcacaaatacagcaaattttaaaaaccccaaatatttaaaa 178
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 319 tacacatatgcatgtatctgcacaaatacagcaatttttaaaaaccccaaatatttaaaa 378
Query: 179 cttgcaatgaaagtaagcagaaccatgtgtttaattggtcatgttttatcccaggtaata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgcaatgaaagtaagcagaaccatgtgtttaattggtcatgttttatcccaggtaata 438
Query: 239 ggactaaaatgagtatgtacctttaaaggctaggataacttcataccagagccatcaatg 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 ggactaaaatgagtatgtacctttaaaggctagcataacttcataccagagccatcaatg 498
Query: 299 ctgcagaaaaagacagctacagtctaatctcaaatgatcattggtgcaaacaacacacca 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 499 ctgcagaaaaagatagctacagtctaatctcaaatgatcattggtgcaaacaatacacca 558
Query: 359 atgtgcacaacttgtatagcacttgggattgtgcatcatgaacaggtgggatttgttttc 418
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgtgca-----------gcacttgggattgtgcatcatgaacaggtgggatttgttttc 607
Query: 419 cgcacacaggctgctttaaataaacagcgcaatcaacataacacattgtaacagcaattg 478
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 cacacacaggctgctttaaataaacagtgcaatcaacataacacattgtaacagcaattg 667
Query: 479 aagactaaagtcatgtgatcatctcagtcactttagacaaagcatttcacaaaaactctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aagactaaagtcatgtgatcatctcagtcactttagacaaagcatttcacaaaaactctt 727
Query: 539 gactgtttaggaacagatgaaattttcttaacacaataacaaagagttggctttttaaaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gactgtttaggaacagatgaaattttcttaacacaataacaaagagttggctttttaaaa 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_h04.g1 MSMg01no483_h04.g1 CHROMAT_FILE:
MSMg01no483_h04.g1 PHD_FILE: MSMg01no483_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:39 2005
(591 letters)
>mm_chr14_105454430_105455422
Length = 993
Score = 1131 bits (585), Expect = 0.0
Identities = 591/593 (99%), Gaps = 2/593 (0%)
Strand = Plus / Minus
Query: 1 ttggttctataatcccgagtttgctgctgccttggctatgagccttacgctgagggctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttggttctataatcccgagtttgctgctgccttggctatgagccttacgctgagggctag 734
Query: 61 gccatcagccagtatgctgagctctagcctatcagcccctatgctgagcaccaggctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gccatcagccagtatgctgagctctagcctatcagcccctatgctgagcaccaggctcac 674
Query: 121 agtatggactctttgacttgtcatctatccca-ccccccaaaaggtaaaacaactctgaa 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 673 agtatggactctttgacttgtcatctatcccacccccccaaaaggtaaaacaactctgaa 614
Query: 180 gtgagatttctc-tttttttcaaggttacagcatcggctgctacaccccggaaaaagtga 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtgagatttctcttttttttcaaggttacagcatcggctgctacaccccggaaaaagtga 554
Query: 239 accctgaaattcagcaaagggataggagtgatagaggtctgtagttagcccctcaggctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 accctgaaattcagcaaagggataggagtgatagaggtctgtagttagcccctcaggctc 494
Query: 299 tgtctgtccttccatagaaggtcctgagtcacagtagaaaataatggatcagggtgactg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtctgtccttccatagaaggtcctgagtcacagtagaaaataatggatcagggtgactg 434
Query: 359 gtagaggtgagattttttaaaaactgaatttattcttggttagttttatgcatgcattaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtagaggtgagattttttaaaaactgaatttattcttggttagttttatgcatgcattaa 374
Query: 419 gtacacgtggtgaccccctacccactctaacgttcttctcacccctattaccttctctcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtacacgtggtgaccccctacccactctaacgttcttctcacccctattaccttctctcc 314
Query: 479 ttataactgttaaacattcatgtctactttattttgagagcctttgagtttaatcaggat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttataactgttaaacattcatgtctactttattttgagagcctttgagtttaatcaggat 254
Query: 539 catctgtgtgacactggctttggatcttgctgttggagcctgctgggcacctc 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catctgtgtgacactggctttggatcttgctgttggagcctgctgggcacctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
