Query= MSMg01no484_d14.b1 MSMg01no484_d14.b1 CHROMAT_FILE:
MSMg01no484_d14.b1 PHD_FILE: MSMg01no484_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:42 2005
(498 letters)
>mm_chr14_88838555_88839452
Length = 898
Score = 545 bits (282), Expect = e-159
Identities = 309/318 (97%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtctatttcccaggctattggttgatttccaaatactaatatatactaaaaaa 64
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 gaattcagactatttccaaggctattggttgatttccaaatactaatatatactaaagaa 557
Query: 65 gacctactgctgaagaaaaaaacctacacatctcaaaaatcacatgctgcatgtttctct 124
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacttactgctgaag-aaaaaacctacacatctcaaaaatcacatgctgcatgtttctct 498
Query: 125 aatgtttagatgctttcttagaaactttatatatgtatattttagatatggatatgaaat 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aatgtttagatgttttcttagaaactttatatatgtatattttagatatggatatgaaat 438
Query: 185 agccgtagaagtaaagaaatcagtaaaggtccatagtgttgtttgagaaaaagaattgaa 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 437 agccatagaagtaaagaaatcagtaaaggtccatagtgttgtttgagaaaaaggattgaa 378
Query: 245 tgtagtgacatcaaggagttaagaggaattaatgaaacagaaaggattaagtgagttgtg 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 tgtagtgacatcaaggagttaagaggaattaatgaaacggaaaggattaagtgagttgtg 318
Query: 305 ggttgaaagagaagagta 322
||||||||||||||||||
Sbjct: 317 ggttgaaagagaagagta 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_d14.g1 MSMg01no484_d14.g1 CHROMAT_FILE:
MSMg01no484_d14.g1 PHD_FILE: MSMg01no484_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:42 2005
(621 letters)
>mm_chr14_88701108_88702128
Length = 1021
Score = 1193 bits (617), Expect = 0.0
Identities = 620/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 1 attgacttttggattatctttctttcgttgttgccaattactcaatgactactaaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgacttttggattatctttctttcgttgttgccaattactcaatgactactaaccttc 260
Query: 61 cttcttttaatgattatcattaaaaaagggctgaatataattaaaagaacaaaatgataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttttaatgattatcattaaaaaagggctgaatataattaaaagaacaaaatgataa 320
Query: 121 actaataccatcttgttttttacttctcaaataataattctttaattttaattttatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaataccatcttgttttttacttctcaaataataattctttaattttaattttatgta 380
Query: 181 ctgagcaattattctgatttttttttggttggcagaattttaatgactgcttctattact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagcaattattctgatttttttttggttggcagaattttaatgactgcttctattact 440
Query: 241 gtaggggttatgggactgtttacatggtttatctggtcctgatttaaagttggtatttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaggggttatgggactgtttacatggtttatctggtcctgatttaaagttggtatttgg 500
Query: 301 tatctgtctcgaaaattgtgcatttcatccagattttccagttttgttgaatatctaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctgtctcgaaaattgtgcatttcatccagattttccagttttgttgaatatctaatg 560
Query: 361 agtttttcatttcctcagtgtctgtcattatgtctcccttttcatttctgattttcttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttttcatttcctcagtgtctgtcattatgtctcccttttcatttctgattttcttac 620
Query: 421 tttggacaatatctatgtgccatctagttagtctggctaagggtttatctatcttgttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggacaatatctatgtgccatctagttagtctggctaagggtttatctatcttgttga 680
Query: 481 tttctcaaagaaccagctcctttttttttgtttgtttttttgtttttttttgtttttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttctcaaagaaccagctcctttttttttgtttgtttttttgtttttttttgtttttttt 740
Query: 541 t-attccttttatagttctttttgtttctaatcagtttatttcagccctgagtttgaata 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttattccttttatagttctttttgtttctaatcagtttatttcagccctgagtttgaata 800
Query: 600 tttcctgctgtctactcctcg 620
|||||||||||||||||||||
Sbjct: 801 tttcctgctgtctactcctcg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
