BAC Information

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BAC

Clone NameMSMg01-484D16
Chromosome14 (Build37)
Map Location 83,303,152 - 83,303,373
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484D16.T7 (MSMg01no484_d16.b1)MSMg01-484D16.TJ (MSMg01no484_d16.g1)
ACCAG563968AG563969
length764751
length of high quality
(start - end)		651 (47 - 697)432 (79 - 510)
definitionCHROMAT_FILE: MSMg01no484_d16.b1 PHD_FILE: MSMg01no484_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:42 2005CHROMAT_FILE: MSMg01no484_d16.g1 PHD_FILE: MSMg01no484_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCAGGTTACAATTCTTTGTTCAGTTCTGAGCCCCTTTTTTTAA
TGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATG
TTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGACTTGCAGA
AACTTTGGAGGTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCA
CAAGCCATTGCTGTTCTGTTTTTGAATTTTTCCCCTGTGCCCATATCTTC
AAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTA
AGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAG
TATGGATCAATTCGCATTCTTCTACATGATAACAACCAGTTATGCCAGCA
CCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCT
TGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCA
ATTCTATTCCATTGGTCTACTTATCTGTCTCTATACCAGTACCATGCAGT
TTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTC
CACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGATTTT
TTTTTCTTTTCATT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAGGAAGAAAAAGGAAAA
GACATCTTTCTTCTGTGACATCTAAAGATGTTAAGAAAGTAAAAAGTTCA
GTTAAGCAAATGCAAAAAGTAAATTAATTTTCTGAATGAATATTTTATTA
GTTACCTGGTTATTATTTTTACTACATAACATATTACATAGTTTTAATTG
TTTCCTAAGTTATTTTTGCCTGTCTCTTTCGTAACTGCCTATTAGAAAAT
GTGTTATCTTGTCTGCCTTTTTGAGATCACTGAAGGATTAGCTGACAAAA
TAAAAATAAAATGAATACTATCTGTTGATCGTTTGCCAGTATAGTTCTTG
AACACTTAGAGGAATAAAAAATTATTTTATTTCTCTCTCTCTCTCCATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATTCTTTATATACATTTCATATGCTATCCCGAAAGTTCCCTATACCCT
CCCCCTGCCCTGCTTCCCTGACCACCCACTCCCAGTTCTTGGCCCTGGCA
TTCCCGTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCTTCTCTT
TCCAGTGATGGGCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGTC
AAGAGCTCCGGGGTACTGGTTAGTTCATATTGCTGTTCCACCTATAGGGT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_d16.g1 MSMg01no484_d16.g1 CHROMAT_FILE:
MSMg01no484_d16.g1 PHD_FILE: MSMg01no484_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:43 2005
         (432 letters)



>mm_chr14_83302952_83303783
          Length = 832

 Score =  429 bits (222), Expect = e-124
 Identities = 222/222 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaaggaagaaaaaggaaaagacatctttcttctgtgacatctaaagatgttaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aacaaaggaagaaaaaggaaaagacatctttcttctgtgacatctaaagatgttaagaaa 363

                                                                       
Query: 61  gtaaaaagttcagttaagcaaatgcaaaaagtaaattaattttctgaatgaatattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtaaaaagttcagttaagcaaatgcaaaaagtaaattaattttctgaatgaatattttat 303

                                                                       
Query: 121 tagttacctggttattatttttactacataacatattacatagttttaattgtttcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagttacctggttattatttttactacataacatattacatagttttaattgtttcctaa 243

                                                     
Query: 181 gttatttttgcctgtctctttcgtaactgcctattagaaaat 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttatttttgcctgtctctttcgtaactgcctattagaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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