Query= MSMg01no485_f06.b1 MSMg01no485_f06.b1 CHROMAT_FILE:
MSMg01no485_f06.b1 PHD_FILE: MSMg01no485_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:14 2005
(674 letters)
>mm_chr14_122675572_122676645
Length = 1074
Score = 1102 bits (570), Expect = 0.0
Identities = 634/672 (94%), Gaps = 29/672 (4%)
Strand = Plus / Minus
Query: 5 gaattccaaaagattc--aggcggtttggctctgagcgtagtcttacacaggttgctttc 62
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 953 gaattccaaaaga--cggaggcggtttggctctgagcgtagtcttacacagggtgctttc 896
Query: 63 caccaggcctgatgacctcagttcaatccaaggaacctacatgatagaaagagaaccaac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 caccaggcctgatgacctcagttcaatccaaggaacctacatgatagaaagagaaccaac 836
Query: 123 acccaaagttgtccttcaacttctacatgcgtgtcctggcacttgtgtgtgcacacgctc 182
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 acccaaagttgtccttcaacttctacatgcgtgtcctggcacttgtgtg----------- 787
Query: 183 ccaaacacatgcatgcacacatattaatatcaaataacaatcataatgaattttttaaaa 242
||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 786 -------------tgcacacatattactatcaaataacaatcataatgaattttttttaa 740
Query: 243 aaaaatttaaatggtctccctgagtagcttgaaggaagaaaggagaccctccaagcacca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaaatttaaatggtctccctgagtagcttgaaggaagaaaggagaccctccaagcacca 680
Query: 303 gtagcagcgggagcctcagaactcgggggttctaagttgacactgtggtcccaaatagct 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtagcagcaggagcctcagaactcgggggttctaagttgacactgtggtcccaaatagct 620
Query: 363 ctcagccatggaaacagaagtaggctctgcatgtcaatacccacttgtggcagaaggtat 422
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 ctcagccatggaaacagaagtaggctctgcgtgtcaatacccacttgtggcagaaggtac 560
Query: 423 gcacacagggtgatgcaaggcaaagagggaaccgaaccaaaccgcaccccttaagatgca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcacacagggtgatgcaaggcaaagagggaaccgaaccaaaccgcaccccttaagatgca 500
Query: 483 ctgtccacgaagagcaaccagcagcaacaagaccgcaaggtggccatagtggttcaaaaa 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 ctgtccacgaagagcaaccagcagcaacaagaccgcaaggtggcc-tagtggttcaaaaa 441
Query: 543 ggaaagggccccatgggggcacggcccatagggagtgacacctattaagaggtatggcct 602
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 ggaaagggccccatgggggcacggcctatagggagtgacacctattaagaggtatggcct 381
Query: 603 agttggcttccaacaagtgtgtcactgtggaggcaggccttggagtcttagatatgttcc 662
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 agttggcttccaacaagtgtgtcactgtggagacaggccttggagtcttagatatgttcc 321
Query: 663 agctacactcag 674
||||||||||||
Sbjct: 320 agctacactcag 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_f06.g1 MSMg01no485_f06.g1 CHROMAT_FILE:
MSMg01no485_f06.g1 PHD_FILE: MSMg01no485_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:14 2005
(588 letters)
>mm_chr14_122497811_122498798
Length = 988
Score = 812 bits (420), Expect = 0.0
Identities = 521/588 (88%), Gaps = 54/588 (9%)
Strand = Plus / Plus
Query: 1 aatacactttgtccttcaaaaaatatgaagaaaaaggcattggtatgtgcggtacagcag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aatacactttgtccttcaaaaaatatgaagaaaaaggcatcggtatgtgcggtacagcag 260
Query: 61 gagtgaatatctgactcgtatccatgcttccatggataacattatcttaggtatgtgtgt 120
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gagtgaatttctgactcgtatccatgcttccatggataacattatcttgggtatgtgtgt 320
Query: 121 gtgggaagccacatgtgccgttgcagagtggcgctgactactgctggccaccacgcataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggaagccacatgtgccgttgcagagtggcgctgactactgctggccaccacgcataa 380
Query: 181 gtttggacaaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggacaaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctg 440
Query: 241 gccagggcatgataatgaggctttgagagtataaccaatcaaatgtgagacatgcaaatg 300
||||||||||||||||||||||||||||| || ||| |
Sbjct: 441 gccagggcatgataatgaggctttgagag---------------gt---aca-------g 475
Query: 301 aggtatgataatgaggctctgtgaggtacagagagagagagagtagccaatcagatgagg 360
|| |||||||||||||||||||||||||||||
Sbjct: 476 ag-----------------------------agagagagagagtagccaatcagatgagg 506
Query: 361 aacatgcaaatgaggcttagtgcataaccaatccgggtgtgagacatgcctctcctaggc 420
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 507 aacatgcaaatgaggcttagtgcataaccaatccgggtgtgagaaacgcctctcctaggc 566
Query: 421 ccatataagcagcaccagttctgggcttggggtctcttcgcctctgcaatcaagctctcc 480
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 567 ctatataagcagcaccagttctgggctgggggtctcttcgcctatgcaatcaagctctcc 626
Query: 481 caataaacgtgtgcagaaggatcctgttgcagtgttgctcttgctggtcgagtctggcgt 540
||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 627 caataaacgtgtgcaaaaggatcctgttgcagcgttgttcttgctggtcgagtctggcgc 686
Query: 541 gcgcaagatgtgtggtacaacaggagtgaatatctgactcgtatccat 588
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acgcaagatgtgtggtacaacaggagtgaatatctgactcgtatccat 734
Score = 108 bits (56), Expect = 9e-28
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 45 atgtgcggtacagcaggagtgaatatctgactcgtatccatgcttccatggataacatta 104
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atgtgtggtacaacaggagtgaatatctgactcgtatccatgcttccatggataacatta 753
Query: 105 tctt 108
||||
Sbjct: 754 tctt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
