BAC Information

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BAC

Clone NameMSMg01-485K18
Chromosome14 (Build37)
Map Location 96,636,923 - 96,767,952
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K18.T7 (MSMg01no485_k18.b1)MSMg01-485K18.TJ (MSMg01no485_k18.g1)
ACCAG565061AG565062
length732738
length of high quality
(start - end)		632 (52 - 683)659 (80 - 738)
definitionCHROMAT_FILE: MSMg01no485_k18.b1 PHD_FILE: MSMg01no485_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:42 2005CHROMAT_FILE: MSMg01no485_k18.g1 PHD_FILE: MSMg01no485_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,767,325 - 96,767,952)(96,636,923 - 96,637,555)
sequence
NNCCGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGTTTTTTGCTTTATGTCCATTGCCTAAAATAGAACC
TGTGCCTCTTTCAGGCTTGTTCTGAGTTCTGTCTCTGACTATTTTGCTGC
CATGTTTACAAGTGATGTCTGTGAAGCCAAGCAAGAGGAGATCAAGATGG
AAGGCATAGACCCAAATGCACTCTGGGATCTTGTTCAATTTGCATATACA
GGTACAGTAAAATAACTATAATACCATAGAGATACCATGTTAATTTTAAA
ACTACTTTAGGTCTTTCAAAGGTAAAAAACATAAAAGACTGAACTTTTAT
CATTAAAGGTTATATAATAGGGAAAGGCTGGTCTTTATGTTCAGTAAAAT
AAAAAAAAAACTATAAAGATGTTGATTTTTATATTTTTCACACAGTATTT
ACACAAAATTAAATATATGAATAAAATCAGTATTGGGGATAGGATGAAGA
AAAAAAAGTAAAAGAGTTAATCATTAAATACAAAGTTGCTTAGCTCCATA
ACTGGCCAGAACATTAATCATCTAAAATGATTCTCTTTAGAAATATGAGT
TCACGTAATTCTTATTTTTCCAATTATGCTAATTAAATGTTAAAATTTGT
ATGACCTTCATATTTATTTGATAACCGAGCTGAAAGATCCAATAGTGAGA
GGTAGAATTTGGAGAATCATTGGTCTTGGACN

TTTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAAAAAATAAGCAGAAC
AAAATTCCCCAGAAATTATCTATTTCCTATTCAATATTTACATTTTGTTC
TTTTTTTTAAAATTATCTTTAATCACTTTTTACAGTCCAGTAATTAATAC
TCTTTCTTTTCTGCCCTCTAACAGTTCCTCATCACATTCCTCCTCCCTGT
GTCTCCAAGAGGTTATTCCCACAACCTCACACCACCCCACACCTCACCAG
GTCTCCCTATTCCCTGGGACCTCAAGTTCCTCAAGGGTCAGGTGTGTCTT
CTTTCACTGAGCTCTGAGTGTGTGTGTATATATATTATATACATATATAT
ATAATTAGTATTTCATATATATATACATATACATATATATATATGTGTGT
GTGTGTGTGTACATATATATATGAATGAAATACTCGGATTTATTTTTCTG
TATTTAAGCATTATATGTAATATGTAAGTCCTCTATGGCTAAGGTATAAT
AACAATCCTTAATACTTAAACACTTGGCTCCCAGTGTATTTCTGATATAA
TAAAGAATATGCTATATCACTCTTGATATCTGTTTATCTATCTATCATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATTCATCATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k18.b1 MSMg01no485_k18.b1 CHROMAT_FILE:
MSMg01no485_k18.b1 PHD_FILE: MSMg01no485_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:42 2005
         (632 letters)



>mm_chr14_96767121_96768152
          Length = 1032

 Score = 1199 bits (620), Expect = 0.0
 Identities = 626/628 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgttttttgctttatgtccattgcctaaaatagaacctgtgcctctttcagg 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcagtgttttgtgttttatgtccattgcctaaaatagaacctgtgcctctttcagg 773

                                                                       
Query: 65  cttgttctgagttctgtctctgactattttgctgccatgtttacaagtgatgtctgtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cttgttctgagttctgtctctgactattttgctgccatgtttacaagtgatgtctgtgaa 713

                                                                       
Query: 125 gccaagcaagaggagatcaagatggaaggcatagacccaaatgcactctgggatcttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gccaagcaagaggagatcaagatggaaggcatagacccaaatgcactctgggatcttgtt 653

                                                                       
Query: 185 caatttgcatatacaggtacagtaaaataactataataccatagagataccatgttaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caatttgcatatacaggtacagtaaaataactataataccatagagataccatgttaatt 593

                                                                       
Query: 245 ttaaaactactttaggtctttcaaaggtaaaaaacataaaagactgaacttttatcatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaaaactactttaggtctttcaaaggtaaaaaacataaaagactgaacttttatcatta 533

                                                                       
Query: 305 aaggttatataatagggaaaggctggtctttatgttcagtaaaataaaaaaaaaactata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaggttatataatagggaaaggctggtctttatgttcagtaaaataaaaaaaaaactata 473

                                                                       
Query: 365 aagatgttgatttttatatttttcacacagtatttacacaaaattaaatatatgaataaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagatgttgatttttatatttttcacacagtatttacacaaaattaaatatatgaataaa 413

                                                                       
Query: 425 atcagtattggggataggatgaagaaaaaaaagtaaaagagttaatcattaaatacaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atcagtattggggataggatgaagaaaaaaaagtaaaagagttaatcattaaatacaaag 353

                                                                       
Query: 485 ttgcttagctccataactggccagaacattaatcatctaaaatgattctctttagaaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgcttagctccataactggccagaacattaatcatctaaaatgattctctttagaaata 293

                                                                       
Query: 545 tgagttcacgtaattcttatttttccaattatgctaattaaatgttaaaatttgtatgac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgagttcacgtaattcttatttttccaattatgctaattaaatgttaaaatttgtatgac 233

                                       
Query: 605 cttcatatttatttgataaccgagctga 632
           ||||||||||||||||||||||||||||
Sbjct: 232 cttcatatttatttgataaccgagctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_k18.g1 MSMg01no485_k18.g1 CHROMAT_FILE:
MSMg01no485_k18.g1 PHD_FILE: MSMg01no485_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:42 2005
         (659 letters)



>mm_chr14_96636723_96637781
          Length = 1059

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagaaaaaataagcagaacaaaattccccagaaattatctatttcctattcaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagaaaaaataagcagaacaaaattccccagaaattatctatttcctattcaatattt 260

                                                                       
Query: 61  acattttgttcttttttttaaaattatctttaatcactttttacagtccagtaattaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattttgttcttttttttaaaattatctttaatcactttttacagtccagtaattaata 320

                                                                       
Query: 121 ctctttcttttctgccctctaacagttcctcatcacattcctcctccctgtgtctccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctttcttttctgccctctaacagttcctcatcacattcctcctccctgtgtctccaag 380

                                                                       
Query: 181 aggttattcccacaacctcacaccaccccacacctcaccaggtctccctattccctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttattcccacaacctcacaccaccccacacctcaccaggtctccctattccctggga 440

                                                                       
Query: 241 cctcaagttcctcaagggtcaggtgtgtcttctttcactgagctctgagtgtgtgtgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcaagttcctcaagggtcaggtgtgtcttctttcactgagctctgagtgtgtgtgtat 500

                                                                       
Query: 301 atatattatatacatatatatataattagtatttcatatatatatacatatacatatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatattatatacatatatatataattagtatttcatatatatatacatatacatatata 560

                                                                       
Query: 361 tatatgtgtgtgtgtgtgtgtacatatatatatgaatgaaatactcggatttatttttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatgtgtgtgtgtgtgtgtacatatatatatgaatgaaatactcggatttatttttct 620

                                                                       
Query: 421 gtatttaagcattatatgtaatatgtaagtcctctatggctaaggtataataacaatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatttaagcattatatgtaatatgtaagtcctctatggctaaggtataataacaatcct 680

                                                                       
Query: 481 taatacttaaacacttggctcccagtgtatttctgatataataaagaatatgctatatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatacttaaacacttggctcccagtgtatttctgatataataaagaatatgctatatca 740

                                                                       
Query: 541 ctcttgatatctgtttatctatctatcatctatctatctatctatctatctatctatcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcttgatatctgtttatctatctatcatctatctatctatctatctatctatctatcta 800

                                            
Query: 601 tctatctatctatctatctatctatctatctat 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 tctatctatctatctatctatctatctatctat 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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