BAC Information

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BAC

Clone NameMSMg01-485L16
Chromosome14 (Build37)
Map Location 102,257,617 - 102,258,487
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485L16.T7 (MSMg01no485_l16.b1)MSMg01-485L16.TJ (MSMg01no485_l16.g1)
ACCAG565104AG565105
length7221,542
length of high quality
(start - end)		670 (53 - 722)---
definitionCHROMAT_FILE: MSMg01no485_l16.b1 PHD_FILE: MSMg01no485_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:47 2005CHROMAT_FILE: MSMg01no485_l16.g1 PHD_FILE: MSMg01no485_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGTCCTCTTTCAGAGCATCAAGTGCTCTTAGTTTTTG
AGCCATCGTTCTATCTATGCTGAAATCTTTCTTCAACAAATTATATATTA
GAATTGCTGTTAAAGAATGTCTTAATAATTACTTATTAGTTTTCTGCTAT
TAGTGATCATAACTGATTACAACTGAAAACAATATAAAAATAACTATTTT
ATTTTCAACTATGTATACATATGTATCCTGTGTAGGTTTCTGCATGGAGT
AAATTTAGTGCCCATAGATGCCAGAATGGGGTATCAGATTCCTCAGTGTT
ATGGTTACAGGTGGCTAGTAGCCACCTGATGTGAGTCCTGGCATCCACAT
TTGAGTCTTCTAGGATAAACAGTATTTGCTCTTAACCTCAGAGCCACCTC
TCTAGCACCTAAATAAGTTTTAATTCATGACTTTCAAAAGTTAACTTCCT
TCTTCTTTGGAGGTATACTGGGATTTGAACCCAGAGTCTTGAGCCTTTTA
TATCTTGCTTACTTTTAAGGAAAGATACATATTTTTTTTTAATATAAAGG
ACATATCTGCCCTTCCTTGATGGCAAGTTACTTTTCTGTACAACCACTGT
ACATATTACTTTATACATATTTTGTTTTTATTTTTAAAAAGTTGGTTTTC
CTTTCTCTCTAGTGCCTTCTGC

NNNNNNNTTGCGTACATATCCCCGACAGAGCTNAAGGAGGCGTGAGGGAA
GCGAGGCGAGAGTGCTGTCTCTCTACCACACATTATAGACGAGTGGAGTN
TCTCTGTGGTCGTGCGGATTCCTCTCGCGATAAGGAGATCAAGGCGATAT
AGTGTACTAGTGCAAATACCACATCTCAGCCGTGCAACGACGCGAGTAAT
CGTAGCTGCTAAGAAACGCCGCCAGCGATGCTATTGATTGCAGAGGACCG
TTCGACGCTGTACGGCATGTGTGATAGCTTACGCGGGGCGCTAGTTCGCG
GAGACGCGAGCGCATTCACTGCAGTGGTGTGTGCGTGCGNGTAATTTATA
CTCGCGCAGTCCAGTACGATCATTGACAGCTGATAGTATTGTGACAGTTG
CTCGCCAGCGGCGCTACACGTCCAGGAGATNACGGAATGTAATGTGCCGG
GTCTGATGAGCCGGCGGAAGATTGAGGTGCGTCGCTCGCCGGTCGTCCGT
TCCACTCATATACTATGTTACTTGCACGCAGTAGTTNCTACCATTATCGT
CGCGCTGCGACTTGTCTGCGATGTCGCTCTACCCGTATACAATATATCCC
TCCATCACTATGAGATATAGTAATTAACTACTCACGAGATGGATACACAT
ATGAGCATAATAGCTAGATGCAAGTAGAAGAATANCTACGCGAGCTAGAC
GTATATAATGTAACAGAAGAATTATTGATATAATAGCATATNACAGATAA
ATTAAGTTAAGTTCTGATCATAATAGAGCACAAGAACAGACGGACAATCG
TGTATGTGCGTCGACACAGTTGATAGTATTAGTTACGATATATAATGAGA
AGAGAGANGACACTTGACACCACCTATATCCGCACGATAATTCCTCATCA
TTATCATATCAACAGTATATGCAAATATATATACTTAGCATAGCAGAGCT
AAGATGTTCTGTGTGACACTCAGTGTGGCGAGCGCTACNCTGCAGTGCCA
GAGCTCGTTGATGGTTAGTCTCGGATGGTGACGACACGGCTCCTATATAC
ATACACGATCACTACTAGTATATANATCGAGAGATGAATTTACCGATGAC
AGTGTATACACGTGCACCATGNAACTCANCAGAGCACACACGCGTCTGCT
GTGGCATAAGCTCATATTGAGCACATTGTGATCACGCGTGCTACTAGTAG
GAGTTGACCACATCAGNATCTGCGACACATGAGCTGAATCATCACTCGCG
TCGCGATACAAGACCNACATATAATACTNATGGCCTAAGCGCACATGATG
TGTATTTGGTGGGCTCGTGCTATGTTCTACATGACAGCATATCAGTTTGT
ATGAAGATCGCGCTCGCTCTACTGTTACTAACGATGATATTCACGCGGCA
CGGATCATCTACTATGTGAGACGCTAAATACGTTGTGGCTGAGTGTCACA
GAAGACAGCTCTAAAGATGTACACCATATCTCACAAGATGAGACACANAG
ATCNTAGCTATGTATATATTCGATGACATATAACAANCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_l16.b1 MSMg01no485_l16.b1 CHROMAT_FILE:
MSMg01no485_l16.b1 PHD_FILE: MSMg01no485_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:47 2005
         (670 letters)



>mm_chr14_102257617_102258687
          Length = 1071

 Score =  775 bits (401), Expect = 0.0
 Identities = 651/871 (74%), Gaps = 207/871 (23%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctggtcctctttcagagcatcaagtgctcttagtttttgagccatcgttctatctat 66
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attctggtcctctgtaagagcatcaagtgctcttagtttttgagccatcgttctatctat 60

                                                                       
Query: 67  gctgaaatctttcttcaacaaattatatattagaattgctgttaaagaatgtcttaataa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61  gctgaaatctttcttcaacaaattatatattagaattgctgttaaagaatgtcttaagaa 120

                                                                       
Query: 127 ttacttattagttttctgctattagtgatcataactgattacaactgaaaacaatataaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttacttattagttttctgctattagtgatcataactgattacaactgaaaacaatataaa 180

                                                                       
Query: 187 aataactattttattttcaactatgtatacatatgtatcctgtgtaggtttctgcatgga 246
           ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 aataattattttattttcaattatgtatacgtatgtatcctgtgtaggtttctgcatgga 240

                                                                       
Query: 247 gtaaatttagtgcccatagatgccagaatggggtatcagattcctcagtgttatggttac 306
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtacatttagtgcccatagatgccagaatggggtatcagattcctcagtgttatggttac 300

                                                                       
Query: 307 aggtggctagtagccacctgatgtgagtcctggcatccacatttgagtcttctaggataa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggtggctagtagccacctgatgtgagtcctggcatccacatttgagtcttctaggataa 360

                                                                       
Query: 367 acagtatttgctcttaacctcagagccacctctctagcacctaaataagtttt------- 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 361 acagtatttgctcttaacctcagagccacctctctagcacctaaataagttttttttttt 420

                                                                       
Query: 419 ------------------------------------------------------------ 419
                                                                       
Sbjct: 421 tttttttaaagatttattttattaatatatgtaagtacactgtagctgtcttcagacact 480

                                                                       
Query: 419 ------------------------------------------------------------ 419
                                                                       
Sbjct: 481 ccagaagagggagtcagatcttgttgcggatggttgtgagccaccatgtggttgctggga 540

                                                                       
Query: 419 ------------------------------------------------------------ 419
                                                                       
Sbjct: 541 tttgaactctggaccttcggaagagcagtcgggtgctcttacccactgagccatctcacc 600

                                                                       
Query: 420 -------------------aattcatgactttcaaaagttaacttccttcttctttggag 460
                              |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 601 agccccctaaataagttttaattcatgactttcaaaagttaactttcttcttctttggag 660

                                                                       
Query: 461 gtatactgggatttgaacccagagtcttgagccttttatatcttgcttacttttaaggaa 520
           |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 661 gtatactgggatttgaacccagagtcatgagccttttacatcttgcttacatttaaggaa 720

                                                                       
Query: 521 agatacatat-ttttttttaatataaaggacatatctgcccttccttgatggcaagttac 579
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agatacatatattttttttaatataaaggacatatctgcccttccttgatggcaagttac 780

                                                                       
Query: 580 ttttctgtacaaccactgtacatattactttatacatattttgtttttatttttaaaaag 639
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 781 ttttctgtacaaccactgcacatattaatttatacatattttgtttttatttttaaaaag 840

                                          
Query: 640 ttggttttcctttctctctagtgccttctgc 670
           |||||||||||||||||||||||||||||||
Sbjct: 841 ttggttttcctttctctctagtgccttctgc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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